Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 9.0e-47 190.3 124 100.0
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 1.9e-28 129.4 123 69.9
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.4e-17 92.0 50 96.0
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 9.8e-17 90.5 50 94.0
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 7.0e-15 84.3 52 90.4
Lsat_1_v5_gn_2_114481 Lactuca sativa HOM05D001092 ORTHO05D020333 1.2e-14 83.6 82 75.6
Glyma.18G143400 Glycine max HOM05D000684 ORTHO05D020333 2.0e-14 82.8 84 51.2
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 5.0e-13 78.2 53 79.2
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 8.5e-13 77.4 51 76.5
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.5e-12 76.6 54 77.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 1.9e-12 76.3 53 77.4
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 3.2e-12 75.5 51 74.5
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 4.2e-12 75.1 53 77.4
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 9.4e-12 73.9 53 73.6
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 1.2e-11 73.6 53 73.6
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 1.6e-11 73.2 48 77.1
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 2.1e-11 72.8 52 73.1
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 2.7e-11 72.4 54 72.2
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.6e-11 72.0 51 70.6
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 4.7e-11 71.6 52 75.0
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 4.7e-11 71.6 53 67.9
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.1e-11 71.2 49 79.6
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 6.1e-11 71.2 50 72.0
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 8.0e-11 70.9 51 68.6
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 8.0e-11 70.9 53 69.8
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 1.4e-10 70.1 50 74.0
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.8e-10 69.7 47 74.5
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.8e-10 69.7 47 74.5
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 1.8e-10 69.7 52 75.0
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.8e-10 69.7 53 69.8
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.3e-10 69.3 46 65.2
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 3.0e-10 68.9 53 73.6
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 4.0e-10 68.6 152 47.4
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 5.2e-10 68.2 50 72.0
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 6.8e-10 67.8 52 71.2
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 6.8e-10 67.8 48 70.8
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 8.8e-10 67.4 51 70.6
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.2e-09 67.0 52 71.2
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.2e-09 67.0 48 75.0
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 1.2e-09 67.0 48 72.9
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.2e-09 67.0 49 75.5
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.5e-09 66.6 47 76.6
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 1.5e-09 66.6 51 68.6
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 2.6e-09 65.9 47 74.5
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 2.6e-09 65.9 51 70.6
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.6e-09 65.9 49 73.5
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.6e-09 65.9 49 73.5
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 3.4e-09 65.5 51 74.5
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 3.4e-09 65.5 49 71.4
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 3.4e-09 65.5 54 68.5
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.4e-09 65.5 49 69.4
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 3.4e-09 65.5 52 69.2
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 3.4e-09 65.5 49 69.4
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 5.7e-09 64.7 54 66.7
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 5.7e-09 64.7 49 71.4
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 5.7e-09 64.7 49 71.4
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 5.7e-09 64.7 49 69.4
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 5.7e-09 64.7 48 66.7
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 9.8e-09 63.9 50 66.0
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.3e-08 63.5 47 68.1
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 1.3e-08 63.5 47 66.0
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.7e-08 63.2 47 66.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 1.7e-08 63.2 47 66.0
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.7e-08 63.2 47 66.0
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 1.7e-08 63.2 47 66.0
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.7e-08 63.2 49 69.4
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.7e-08 63.2 57 61.4
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.7e-08 63.2 51 68.6
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 2.2e-08 62.8 47 66.0
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 2.2e-08 62.8 47 66.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 2.2e-08 62.8 47 66.0
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.2e-08 62.8 54 68.5
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 2.8e-08 62.4 47 63.8
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 2.8e-08 62.4 47 63.8
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 2.8e-08 62.4 47 63.8
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.8e-08 62.4 47 66.0
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.8e-08 62.4 47 66.0
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 2.8e-08 62.4 54 64.8
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 3.7e-08 62.0 47 63.8
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 3.7e-08 62.0 47 63.8
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 3.7e-08 62.0 39 79.5
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 3.7e-08 62.0 47 63.8
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 3.7e-08 62.0 44 70.5
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 6.3e-08 61.2 47 63.8
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 6.3e-08 61.2 48 70.8
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 8.3e-08 60.8 47 63.8
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 8.3e-08 60.8 47 63.8
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 8.3e-08 60.8 43 69.8
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.1e-07 60.5 48 66.7
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.1e-07 60.5 49 65.3
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.1e-07 60.5 49 65.3
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.1e-07 60.5 54 63.0
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.8e-07 59.7 54 63.0
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 1.8e-07 59.7 52 61.5
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.4e-07 59.3 48 68.8
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 2.4e-07 59.3 45 66.7
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.1e-07 58.9 52 63.5
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 4.1e-07 58.5 51 64.7
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 7.0e-07 57.8 52 63.5
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 7.0e-07 57.8 48 62.5
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.0e-06 56.2 43 65.1
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 3.5e-06 55.5 40 67.5
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 5.9e-06 54.7 44 65.9


User provided reference genes

Program Settings