Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 2.9e-277 958.0 500 100.0
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 9.1e-247 856.7 500 90.4
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.4e-231 805.4 504 84.7
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 3.3e-225 785.0 500 83.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.3e-184 650.2 499 68.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 3.7e-184 648.7 499 69.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 7.8e-182 641.0 499 68.9
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 5.1e-181 638.3 499 69.9
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.5e-180 636.0 499 69.7
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 2.5e-180 636.0 499 67.9
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 4.0e-178 628.6 499 68.3
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 2.0e-177 626.3 499 66.9
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 7.1e-175 617.8 499 66.5
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 4.6e-174 615.1 499 66.1
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.6e-174 615.1 499 67.1
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 1.7e-173 613.2 499 64.7
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 6.6e-173 611.3 499 65.5
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.5e-172 610.1 499 65.7
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.9e-172 609.8 501 66.5
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.9e-172 609.8 501 66.5
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 9.6e-172 607.4 499 66.9
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 6.2e-171 604.7 499 64.9
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 4.0e-170 602.1 499 64.3
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.0e-169 599.7 499 64.9
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.6e-169 599.4 499 64.5
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 1.3e-168 597.0 499 63.7
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.3e-168 597.0 499 64.5
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 6.4e-168 594.7 451 68.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.6e-166 588.6 494 63.6
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 3.9e-165 585.5 463 66.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 5.1e-165 585.1 499 62.7
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.5e-164 583.6 499 63.5
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.5e-164 583.6 499 63.3
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.3e-164 582.4 465 64.9
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 7.3e-164 581.3 463 65.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 9.6e-164 580.9 499 62.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.6e-163 578.9 499 62.3
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 5.3e-162 575.1 465 65.4
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 6.9e-162 574.7 463 65.2
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.2e-161 573.9 499 61.9
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.5e-161 573.5 427 69.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 3.4e-161 572.4 471 65.6
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 3.4e-161 572.4 485 62.9
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.3e-160 570.5 498 62.0
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 2.9e-160 569.3 492 62.0
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 3.8e-160 568.9 461 64.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 4.9e-160 568.5 469 63.5
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 4.9e-160 568.5 463 64.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 4.9e-160 568.5 499 62.1
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 8.4e-160 567.8 465 65.8
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.4e-159 566.2 465 63.2
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 4.2e-159 565.5 463 64.1
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 7.1e-159 564.7 464 64.4
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.2e-158 563.9 473 62.6
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.1e-158 563.1 500 61.2
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.5e-158 562.4 499 60.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 4.6e-158 562.0 464 64.4
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 7.9e-158 561.2 465 63.7
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.0e-157 560.8 465 63.4
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.3e-157 560.5 463 63.7
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.8e-157 560.1 427 68.4
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.3e-157 559.7 465 63.2
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 3.0e-157 559.3 476 61.6
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 3.0e-157 559.3 499 60.5
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 5.1e-157 558.5 464 64.0
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.9e-156 556.6 465 62.8
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.3e-155 553.9 465 62.8
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.6e-155 553.5 464 64.0
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 2.8e-155 552.7 466 63.5
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 2.8e-155 552.7 495 61.0
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.4e-154 549.7 464 63.4
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 9.0e-154 547.7 500 59.8
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 1.2e-153 547.4 465 61.7
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 1.9e-151 540.0 463 62.9
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.2e-151 538.9 464 61.9
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.2e-150 537.3 464 61.6
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.5e-150 535.8 514 57.0
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.1e-148 530.8 459 61.2
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 1.1e-148 530.8 476 60.3
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.6e-147 526.9 469 59.7
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.4e-146 523.9 502 56.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 2.4e-146 523.1 466 60.3
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 5.3e-146 521.9 476 59.2
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 2.0e-145 520.0 476 59.2
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 1.0e-144 517.7 504 56.2
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.0e-144 517.7 469 59.7
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.7e-144 516.9 462 58.7
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.9e-144 516.2 466 60.1
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 3.8e-144 515.8 464 59.9
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.1e-143 514.2 468 57.9
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.5e-143 513.1 499 57.1
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.2e-143 512.7 503 56.5
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 3.2e-143 512.7 503 56.5
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.2e-143 512.3 501 57.1
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 5.5e-143 511.9 465 59.4
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.3e-141 507.3 499 55.7
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 3.9e-141 505.8 504 56.5
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 3.9e-141 505.8 504 56.5
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 3.9e-141 505.8 504 56.5
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 6.7e-141 505.0 497 59.0
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 2.5e-140 503.1 456 60.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 7.4e-140 501.5 467 58.5
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.6e-139 500.4 499 55.3
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 1.8e-138 496.9 500 55.8
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.6e-137 493.0 510 55.3
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 5.9e-137 491.9 500 55.4
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.2e-136 490.0 468 57.1
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 1.3e-131 474.2 472 55.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.7e-131 473.8 467 55.7
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 2.4e-130 469.9 464 55.8
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 4.1e-130 469.2 420 58.1
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 5.9e-129 465.3 463 56.2
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.2e-128 463.4 464 57.1
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.5e-128 461.8 459 55.3
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 4.2e-127 459.1 464 55.8
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.3e-125 453.4 480 53.1
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.1e-124 451.1 464 55.6
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.7e-123 446.0 459 52.7
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 6.3e-123 445.3 468 51.5
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.8e-122 443.7 413 57.9
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 5.5e-119 432.2 464 52.6
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 3.0e-117 426.4 468 51.3
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.1e-114 417.9 459 50.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 1.1e-114 417.9 459 50.8
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.2e-113 414.5 459 50.3
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-106 389.8 467 49.0
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.1e-106 389.8 298 67.8
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 8.8e-101 371.7 476 47.3
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 6.3e-99 365.5 466 46.6
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.8e-98 364.0 317 62.8
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.8e-98 364.0 317 62.8
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 7.2e-95 352.1 467 43.3
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 6.3e-91 339.0 378 50.0
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 2.0e-89 334.0 316 56.6
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 2.5e-87 327.0 435 43.2
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 7.3e-79 298.9 459 39.2
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 5.2e-77 292.7 273 59.7
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 3.2e-74 283.5 231 68.4
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 1.6e-73 281.2 412 41.7
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.9e-72 276.6 320 52.8
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 4.4e-68 263.1 234 58.5
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 3.0e-64 250.4 200 67.0
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.6e-62 243.4 361 39.6
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.1e-54 217.6 197 57.9
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.2e-51 207.6 459 34.6
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.8e-45 188.0 146 57.5
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.4e-42 177.6 163 58.3
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.4e-42 177.6 163 58.3
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 2.1e-41 174.5 422 30.8
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.5e-26 123.2 93 59.1
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 2.3e-16 91.3 87 60.9
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.0e-08 65.9 54 57.4


User provided reference genes

Program Settings