Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G080000 Glycine max HOM05D003128 ORTHO05D004333 9.2e-87 323.6 167 100.0
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 3.0e-61 238.8 173 75.1
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 9.6e-60 233.8 173 73.4
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 5.3e-58 228.0 165 73.3
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 6.9e-58 227.6 174 72.4
arahy.Tifrunner.gnm1.ann1.31C5CF Arachis hypogaea HOM05D003128 ORTHO05D004333 2.0e-57 226.1 161 73.9
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 9.9e-57 223.8 165 75.2
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 1.7e-56 223.0 174 71.3
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 9.3e-55 217.2 165 70.3
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 2.7e-54 215.7 169 69.2
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 7.9e-54 214.2 171 69.6
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 8.7e-53 210.7 173 68.8
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 4.8e-51 204.9 149 73.2
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 1.3e-48 196.8 170 61.8
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 1.7e-48 196.4 173 65.9
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 2.2e-48 196.1 175 63.4
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 2.9e-48 195.7 172 62.8
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 3.8e-48 195.3 166 65.1
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.9e-47 193.0 161 64.0
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.8e-45 186.4 175 61.1
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 5.1e-45 184.9 175 60.0
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 1.1e-44 183.7 172 61.0
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 2.5e-44 182.6 173 60.1
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 3.3e-44 182.2 174 56.3
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 4.3e-44 181.8 181 56.4
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 9.7e-44 180.6 171 56.7
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 1.3e-43 180.3 175 58.9
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 2.8e-43 179.1 152 63.2
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 2.8e-43 179.1 172 57.6
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 6.3e-43 177.9 166 59.0
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 8.2e-43 177.6 163 58.9
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 1.1e-42 177.2 169 55.6
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.4e-42 176.8 171 59.6
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.4e-42 176.8 171 59.6
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 2.4e-42 176.0 174 55.7
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 4.1e-42 175.3 166 59.6
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 6.9e-42 174.5 164 55.5
AUR62003293 Chenopodium quinoa HOM05D003128 ORTHO05D004333 1.2e-41 173.7 157 61.8
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 2.0e-41 172.9 168 56.5
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 2.0e-41 172.9 170 55.9
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 2.0e-41 172.9 170 55.9
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 2.6e-41 172.6 168 58.3
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 3.4e-41 172.2 169 56.2
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 4.5e-41 171.8 149 62.4
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 7.6e-41 171.0 168 56.5
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 1.0e-40 170.6 176 54.5
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 1.7e-40 169.9 163 59.5
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 2.2e-40 169.5 151 61.6
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 2.2e-40 169.5 148 60.1
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 2.9e-40 169.1 162 58.0
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 8.5e-40 167.5 170 54.7
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.9e-39 166.4 173 55.5
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 2.5e-39 166.0 164 57.3
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 5.5e-39 164.9 173 53.8
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 1.6e-38 163.3 164 54.3
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 4.6e-38 161.8 182 53.8
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.6e-38 161.8 182 53.8
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.6e-38 161.8 185 53.5
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 4.6e-38 161.8 182 53.8
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 4.6e-38 161.8 173 56.1
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 7.9e-38 161.0 171 52.6
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 2.3e-37 159.5 178 51.1
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.0e-37 159.1 169 53.3
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 3.0e-37 159.1 184 52.7
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 3.9e-37 158.7 174 54.6
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 6.7e-37 157.9 174 51.7
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.1e-36 157.1 168 55.4
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 1.9e-36 156.4 176 50.6
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.9e-36 156.4 173 53.8
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 3.3e-36 155.6 173 53.8
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 7.4e-36 154.5 171 54.4
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 7.4e-36 154.5 173 53.2
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 9.7e-36 154.1 171 53.2
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 9.7e-36 154.1 168 54.8
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 4.8e-35 151.8 171 53.8
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 6.3e-35 151.4 169 52.7
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 6.3e-35 151.4 152 53.9
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 6.3e-35 151.4 152 53.9
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 8.2e-35 151.0 147 57.1
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 5.3e-34 148.3 172 51.2
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 9.1e-34 147.5 172 52.9
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 7.7e-33 144.4 168 49.4
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 7.7e-33 144.4 170 52.4
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 1.3e-32 143.7 168 48.2
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 1.7e-32 143.3 170 51.2
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.2e-32 142.9 183 48.6
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 2.9e-32 142.5 171 52.0
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 2.9e-32 142.5 171 52.0
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 5.0e-32 141.7 167 52.7
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.1e-31 140.6 169 51.5
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.1e-31 140.6 169 51.5
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.9e-31 139.8 170 50.6
SEGI_30432 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 2.5e-31 139.4 166 48.8
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 3.2e-31 139.0 175 48.6
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 4.2e-31 138.7 134 56.0
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.2e-31 138.7 145 53.1
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 5.5e-31 138.3 168 50.6
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 9.4e-31 137.5 172 51.2
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.2e-30 137.1 168 50.0
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 2.1e-30 136.3 171 51.5
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.6e-30 135.6 168 50.0
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 7.9e-30 134.4 171 50.9
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 1.8e-29 133.3 172 52.9
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 5.1e-29 131.7 143 49.7
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 5.1e-29 131.7 163 51.5
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 5.1e-29 131.7 165 45.5
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.5e-28 130.2 166 50.6
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 3.3e-28 129.0 172 47.7
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 4.4e-28 128.6 167 50.9
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 2.2e-27 126.3 165 49.7
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 4.8e-27 125.2 165 48.5
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 6.3e-27 124.8 169 50.3
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 1.1e-26 124.0 167 43.7
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 9.1e-26 120.9 165 47.9
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 2.0e-25 119.8 148 46.6
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.6e-25 119.4 167 43.7
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 3.4e-25 119.0 157 49.7
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 3.4e-25 119.0 137 47.4
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 5.9e-25 118.2 164 47.6
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 1.0e-24 117.5 168 41.7
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 1.1e-23 114.0 166 47.0
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 3.2e-23 112.5 169 40.8
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 3.2e-23 112.5 144 39.6
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 4.2e-23 112.1 161 44.1
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 9.4e-23 110.9 164 41.5
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 9.4e-23 110.9 164 41.5
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 1.2e-22 110.5 175 40.0
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 8.0e-22 107.8 171 39.8
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 5.7e-20 101.7 121 47.9
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 5.7e-20 101.7 173 42.2
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 3.7e-19 99.0 165 38.2
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.4e-18 97.1 144 40.3
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.1e-18 95.9 164 36.6
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 4.1e-18 95.5 95 52.6
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 4.5e-17 92.0 92 54.3
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 5.9e-17 91.7 75 65.3
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 1.0e-16 90.9 165 37.0
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 2.9e-16 89.4 165 37.0
Cpa.g.c41200 Carica papaya HOM05D003128 ORTHO05D004333 3.8e-16 89.0 104 51.9
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 1.1e-15 87.4 165 36.4
ECA238G4552 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-14 83.2 149 34.2
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 1.4e-13 80.5 165 35.2
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 6.7e-13 78.2 222 31.1
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 1.2e-12 77.4 95 44.2
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 3.3e-12 75.9 96 43.8
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 1.7e-11 73.6 105 41.9
C08p48830 Brassica napus HOM05D003128 ORTHO05D024111 1.6e-09 67.0 66 53.0
CDE08G1262 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 4.5e-09 65.5 83 42.2
BolC8t50947H Brassica oleracea HOM05D003128 ORTHO05D004333 1.5e-07 60.5 96 45.8


User provided reference genes

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