Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.1e-153 544.7 270 100.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.0e-143 511.9 270 95.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 6.4e-130 467.6 266 88.0
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 3.2e-129 465.3 268 86.9
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-128 462.2 266 86.8
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 4.6e-128 461.5 268 86.2
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 8.6e-127 457.2 265 85.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 8.6e-127 457.2 266 86.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 4.3e-126 454.9 268 85.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 9.6e-126 453.8 268 85.1
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.4e-124 449.1 268 82.5
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.8e-122 441.8 266 83.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.9e-121 439.5 266 83.5
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.2e-121 438.7 265 83.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 7.1e-121 437.6 268 81.7
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-120 435.6 268 81.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.7e-120 435.6 267 81.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.0e-120 434.5 265 82.3
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.0e-119 433.7 265 81.9
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.5e-118 429.9 265 81.1
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 4.3e-118 428.3 265 80.8
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 5.6e-118 427.9 265 81.9
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 5.6e-118 427.9 266 82.3
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.6e-117 426.4 266 82.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.1e-117 426.0 268 80.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.8e-117 425.6 265 80.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.8e-117 425.6 265 80.0
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.6e-117 425.2 267 79.8
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.1e-116 423.7 269 79.6
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.8e-116 422.9 268 79.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 6.9e-116 421.0 268 78.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.2e-115 420.2 265 78.9
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-115 419.9 266 79.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.6e-115 419.1 268 77.6
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.4e-115 418.3 268 79.9
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.4e-115 418.3 265 79.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.6e-115 417.5 265 79.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 9.9e-115 417.2 265 78.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 9.9e-115 417.2 265 78.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.3e-114 416.8 263 79.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.7e-114 416.4 269 77.7
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.7e-114 416.4 265 78.5
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.8e-114 415.2 268 77.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.1e-113 413.7 268 77.2
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-113 413.7 268 77.2
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-113 413.7 265 78.9
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-113 413.7 264 78.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.4e-113 412.5 268 76.9
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 2.4e-113 412.5 269 77.0
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.2e-113 412.1 265 77.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 4.2e-113 411.8 267 77.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 9.3e-113 410.6 265 77.4
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 9.3e-113 410.6 264 78.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.2e-112 410.2 268 75.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.6e-112 409.8 267 76.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.1e-112 409.5 262 77.5
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.5e-112 408.7 265 78.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.5e-112 408.7 262 79.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 4.6e-112 408.3 267 76.8
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.6e-112 408.3 265 77.4
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.0e-111 407.1 265 76.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.0e-111 407.1 264 77.7
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-111 406.8 265 77.0
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.7e-111 406.4 262 76.0
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.9e-111 405.2 265 77.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 8.7e-111 404.1 269 75.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.1e-110 403.7 264 76.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.9e-110 402.9 265 76.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.3e-110 401.7 264 77.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 5.6e-110 401.4 265 76.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 9.6e-110 400.6 283 72.8
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-109 399.8 262 76.0
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.8e-109 399.1 267 74.5
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.6e-109 398.7 247 82.6
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-108 396.7 265 74.0
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.0e-108 395.2 293 69.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.9e-108 394.4 288 71.2
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.6e-107 392.5 268 72.8
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 4.5e-107 391.7 265 74.0
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 9.9e-107 390.6 265 72.5
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.4e-106 387.9 265 74.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.4e-106 387.5 265 72.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.4e-105 386.7 267 72.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 4.2e-105 385.2 268 71.6
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.2e-105 385.2 265 69.4
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 5.4e-105 384.8 260 72.3
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 5.4e-105 384.8 267 73.0
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.3e-105 384.0 265 73.6
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.7e-104 382.5 265 72.1
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 2.7e-104 382.5 267 70.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.7e-104 382.5 267 73.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 4.6e-104 381.7 247 78.1
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.6e-104 381.7 293 68.6
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 7.9e-104 380.9 276 69.6
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.0e-103 380.6 248 77.4
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.0e-103 380.6 265 70.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.3e-103 379.4 264 72.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.9e-103 378.6 260 74.6
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 5.1e-103 378.3 247 78.1
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 6.7e-103 377.9 268 69.8
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.1e-102 377.1 262 71.0
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.5e-102 376.7 268 69.4
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.9e-102 376.3 267 68.5
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 3.3e-102 375.6 262 70.2
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 4.3e-102 375.2 262 70.2
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 9.6e-102 374.0 268 69.4
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 9.6e-102 374.0 279 71.0
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-101 373.6 268 68.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.6e-101 373.2 269 68.0
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 3.7e-101 372.1 268 69.0
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 4.8e-101 371.7 265 70.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.2e-101 371.3 262 69.8
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 2.4e-100 369.4 262 69.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 4.0e-100 368.6 248 75.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.0e-100 368.6 272 67.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 9.0e-100 367.5 248 74.6
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.6e-99 364.4 248 74.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 7.6e-99 364.4 260 71.2
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.9e-98 362.5 294 62.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 8.4e-98 360.9 243 72.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 5.5e-97 358.2 248 73.0
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.8e-95 353.2 298 62.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.5e-94 349.4 260 66.9
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.5e-94 349.4 266 68.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 3.3e-94 349.0 227 78.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-92 343.6 272 65.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 7.6e-91 337.8 265 66.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.9e-90 335.9 234 73.9
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 6.1e-88 328.2 282 63.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 3.9e-87 325.5 467 42.8
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 9.7e-86 320.9 202 81.2
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-84 317.4 192 83.9
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.6e-80 303.5 268 61.9
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 5.7e-78 295.0 203 74.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.2e-77 293.1 266 57.1
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-76 289.7 270 57.8
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.2e-75 287.3 258 56.6
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.3e-74 283.9 163 86.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 5.0e-74 282.0 260 56.2
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.5e-67 260.4 162 78.4
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.8e-60 236.9 147 78.9
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-58 229.9 149 72.5
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 8.8e-55 218.0 147 74.1
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.4e-54 216.1 162 67.9
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.7e-53 213.8 215 54.4
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-53 213.0 165 66.7
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.8e-52 210.3 197 58.4
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.4e-49 198.0 294 40.5
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.2e-43 181.0 102 84.3
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.6e-40 170.6 281 40.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.8e-40 169.9 103 79.6
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 8.3e-37 158.3 100 73.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 7.0e-36 155.2 115 71.3
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-34 151.0 194 45.9
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.0e-26 123.2 244 36.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.9e-26 122.9 71 84.5
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.1e-25 121.3 273 33.0
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 8.1e-24 115.2 290 32.1
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.4e-22 109.4 61 85.2
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.4e-20 104.4 127 45.7
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-18 97.8 66 72.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.9e-17 94.0 56 83.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.9e-17 94.0 64 70.3
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.3e-17 93.2 57 75.4


User provided reference genes

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