Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 2.9e-105 385.2 185 100.0
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 1.7e-102 375.9 185 97.3
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 1.1e-99 366.7 185 95.1
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 5.2e-99 364.4 185 94.1
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 1.4e-96 356.3 185 91.9
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 3.2e-96 355.1 185 91.4
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 2.1e-95 352.4 185 90.8
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 2.7e-95 352.1 185 90.3
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 4.6e-95 351.3 185 90.3
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 4.6e-95 351.3 185 90.3
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 6.6e-94 347.4 185 88.6
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 1.9e-93 345.9 185 89.2
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 3.3e-93 345.1 185 88.6
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 3.3e-93 345.1 185 88.1
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 5.6e-93 344.4 185 89.2
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 2.8e-92 342.0 185 89.2
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 2.8e-92 342.0 185 89.2
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 2.8e-92 342.0 185 87.6
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 2.8e-92 342.0 185 87.0
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 4.7e-92 341.3 185 87.6
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 1.8e-91 339.3 185 87.6
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 2.3e-91 339.0 185 87.6
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 2.3e-91 339.0 185 86.5
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 4.0e-91 338.2 185 85.4
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 6.8e-91 337.4 185 87.0
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 6.8e-91 337.4 185 87.0
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 6.8e-91 337.4 185 87.6
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 1.2e-90 336.7 185 87.0
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 2.6e-90 335.5 185 85.9
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 2.6e-90 335.5 185 84.9
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 3.4e-90 335.1 185 86.5
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 3.4e-90 335.1 185 87.0
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 4.4e-90 334.7 185 87.0
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 4.4e-90 334.7 185 85.9
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 5.8e-90 334.3 185 87.6
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 5.8e-90 334.3 185 84.9
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 7.6e-90 334.0 185 84.9
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 1.3e-89 333.2 185 84.3
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 2.2e-89 332.4 185 88.6
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 3.8e-89 331.6 185 85.4
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 3.8e-89 331.6 185 86.5
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 3.8e-89 331.6 185 84.9
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 6.4e-89 330.9 185 83.8
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 8.4e-89 330.5 185 85.4
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 8.4e-89 330.5 185 83.8
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 1.4e-88 329.7 185 84.3
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 1.4e-88 329.7 185 84.3
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 3.2e-88 328.6 185 83.2
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 3.2e-88 328.6 185 84.3
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 7.1e-88 327.4 185 84.3
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 9.2e-88 327.0 185 84.3
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 9.2e-88 327.0 185 84.9
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 2.7e-87 325.5 185 84.3
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 3.5e-87 325.1 185 80.5
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 3.5e-87 325.1 185 82.7
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 3.5e-87 325.1 185 83.8
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 4.6e-87 324.7 185 83.8
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 4.6e-87 324.7 185 82.7
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 4.6e-87 324.7 185 82.7
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 1.0e-86 323.6 185 83.8
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.3e-86 323.2 197 81.2
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 1.3e-86 323.2 185 82.7
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 1.3e-86 323.2 185 82.2
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 1.3e-86 323.2 185 82.2
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 1.7e-86 322.8 184 82.1
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 2.3e-86 322.4 185 84.3
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 6.6e-86 320.9 185 82.7
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 6.6e-86 320.9 185 83.2
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 6.6e-86 320.9 185 83.2
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 1.1e-85 320.1 185 83.8
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 1.5e-85 319.7 185 82.7
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 1.5e-85 319.7 185 81.1
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 2.5e-85 318.9 185 81.1
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 3.3e-85 318.5 185 81.6
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 4.3e-85 318.2 206 78.2
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 7.3e-85 317.4 185 83.2
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 1.2e-84 316.6 185 82.2
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 2.1e-84 315.8 185 81.6
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.8e-84 315.5 206 77.7
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 2.8e-84 315.5 185 81.1
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 6.2e-84 314.3 185 82.2
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 6.2e-84 314.3 185 80.5
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 8.1e-84 313.9 185 81.1
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 1.8e-83 312.8 201 75.6
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.4e-83 312.4 216 74.1
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 2.4e-83 312.4 166 89.2
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 3.1e-83 312.0 184 80.4
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 5.2e-83 311.2 185 80.5
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 6.9e-83 310.8 173 85.0
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 1.2e-82 310.1 185 79.5
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 1.5e-82 309.7 185 79.5
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 9.9e-82 307.0 166 86.7
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 1.7e-81 306.2 185 78.9
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 4.6e-79 298.1 219 68.0
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 3.9e-78 295.0 165 83.0
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 1.3e-76 290.0 185 74.6
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 4.8e-76 288.1 185 76.2
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 6.2e-76 287.7 167 82.6
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 5.8e-74 281.2 183 72.1
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 1.3e-73 280.0 185 68.6
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 1.7e-73 279.6 185 71.9
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 3.9e-70 268.5 183 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 9.0e-67 257.3 183 64.5
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 1.2e-66 256.9 173 74.0
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 6.0e-63 244.6 185 68.1
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 4.3e-61 238.4 141 80.9
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 1.3e-60 236.9 141 79.4
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.4e-59 232.6 135 81.5
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 1.4e-56 223.4 127 83.5
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 4.3e-53 211.8 184 56.0
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 3.7e-52 208.8 182 57.1
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 1.1e-51 207.2 152 68.4
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 1.4e-51 206.8 157 63.7
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 5.3e-51 204.9 185 59.5
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 5.0e-49 198.4 186 53.2
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 4.2e-48 195.3 143 65.7
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 2.0e-42 176.4 177 51.4
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 1.1e-40 170.6 149 62.4
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 1.3e-36 157.1 182 46.7
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 1.4e-35 153.7 84 86.9
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 4.1e-35 152.1 172 43.0
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 2.9e-33 146.0 84 81.0
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 1.8e-30 136.7 137 49.6
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 1.4e-22 110.5 180 35.0
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 2.3e-22 109.8 119 53.8
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 1.5e-21 107.1 114 43.9
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 2.2e-17 93.2 81 63.0
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 5.5e-16 88.6 43 90.7
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.4e-11 73.2 50 70.0


User provided reference genes

Program Settings