Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G019500 Glycine max HOM05D000198 ORTHO05D035988 3.3e-22 107.5 53 100.0
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 1.9e-09 65.1 34 82.4
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 1.9e-09 65.1 34 82.4
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 3.2e-09 64.3 34 85.3
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 4.2e-09 63.9 34 85.3
CANSAT56G2629 Cannabis sativa HOM05D000198 ORTHO05D005702 2.1e-08 61.6 34 73.5
CANSAT56G4341 Cannabis sativa HOM05D000198 ORTHO05D005702 2.1e-08 61.6 34 73.5
Lalb_Chr25g0284351 Lupinus albus HOM05D000198 ORTHO05D005702 2.1e-08 61.6 34 79.4
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 2.7e-08 61.2 34 73.5
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 3.5e-08 60.8 34 79.4
TWI38G1970 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 3.5e-08 60.8 36 75.0
GSVIVG01036719001 Vitis vinifera HOM05D000198 ORTHO05D005702 3.5e-08 60.8 36 69.4
Atru.chr1.55 Acer truncatum HOM05D000198 ORTHO05D005702 4.6e-08 60.5 34 76.5
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 4.6e-08 60.5 34 76.5
THA.LOC104808138 Tarenaya hassleriana HOM05D000198 ORTHO05D005702 4.6e-08 60.5 34 76.5
TWI38G0157 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 4.6e-08 60.5 36 72.2
GSVIVG01036720001 Vitis vinifera HOM05D000198 ORTHO05D005702 4.6e-08 60.5 36 72.2
ClCG02G018730 Citrullus lanatus HOM05D000198 ORTHO05D005702 7.9e-08 59.7 34 73.5
Sed0009726 Sechium edule HOM05D000198 ORTHO05D005702 7.9e-08 59.7 34 73.5
ATR0697G108 Amborella trichopoda HOM05D000198 ORTHO05D005702 1.0e-07 59.3 34 73.5
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 1.0e-07 59.3 35 71.4
PSO384G4748 Papaver somniferum HOM05D000198 ORTHO05D005702 1.0e-07 59.3 35 68.6
QL04p094021 Quercus lobata HOM05D000198 ORTHO05D005702 1.0e-07 59.3 35 71.4
FvH4_3g14080 Fragaria vesca HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 73.5
FAN11G1157 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 73.5
FAN16G0643 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 73.5
FAN21G2180 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 73.5
FAN25G1729 Fragaria x ananassa HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 73.5
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 76.5
RcHm_v2.0_Chr5g0023391 Rosa chinensis HOM05D000198 ORTHO05D005702 1.3e-07 58.9 34 73.5
DCAR_032012 Daucus carota HOM05D000198 ORTHO05D005702 1.8e-07 58.5 34 67.6
CSS0002476 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 2.3e-07 58.2 35 71.4
Eucgr.F04474 Eucalyptus grandis HOM05D000198 ORTHO05D005702 2.3e-07 58.2 34 76.5
MD10G1216600 Malus domestica HOM05D000198 ORTHO05D005702 2.3e-07 58.2 34 73.5
Prupe.4G128100 Prunus persica HOM05D000198 ORTHO05D005702 2.3e-07 58.2 34 70.6
SGA_v2.0_scaffold7G03629 Striga asiatica HOM05D000198 ORTHO05D005702 2.3e-07 58.2 34 73.5
Cpa.g.sc32.93 Carica papaya HOM05D000198 ORTHO05D005702 3.0e-07 57.8 34 73.5
Manes.16G048100 Manihot esculenta HOM05D000198 ORTHO05D005702 3.0e-07 57.8 34 70.6
Cfa019371 Carpinus fangiana HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 67.6
Cc05_g16560 Coffea canephora HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 73.5
Haze_07763 Corylus avellana HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 67.6
Duzib268G0428 Durio zibethinus HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 73.5
Hma1.2p1_0334F.1_g128390 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 70.6
Hma1.2p1_1896F.1_g306840 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 70.6
Lalb_Chr20g0108421 Lupinus albus HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 73.5
SHI33378 Sapria himalayana HOM05D000198 ORTHO05D005702 3.9e-07 57.4 34 73.5
Actinidia12753 Actinidia chinensis HOM05D000198 ORTHO05D005702 5.1e-07 57.0 34 73.5
Carub.0002s2630 Capsella rubella HOM05D000198 ORTHO05D005702 5.1e-07 57.0 34 76.5
ECA236G0201 Erigeron canadensis HOM05D000198 ORTHO05D005702 5.1e-07 57.0 34 70.6
MD05G1238300 Malus domestica HOM05D000198 ORTHO05D005702 5.1e-07 57.0 34 70.6
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 5.1e-07 57.0 34 76.5
GSVIVG01036721001 Vitis vinifera HOM05D000198 ORTHO05D005702 5.1e-07 57.0 35 71.4
AL2G40050 Arabidopsis lyrata HOM05D000198 ORTHO05D005702 8.7e-07 56.2 34 76.5
BcaC08g47505 Brassica carinata HOM05D000198 ORTHO05D005702 8.7e-07 56.2 43 60.5
DCAR_004554 Daucus carota HOM05D000198 ORTHO05D005702 1.1e-06 55.8 34 67.6
Gohir.A01G100200 Gossypium hirsutum HOM05D000198 ORTHO05D005702 1.1e-06 55.8 35 62.9
Gohir.D01G084900 Gossypium hirsutum HOM05D000198 ORTHO05D005702 1.1e-06 55.8 35 62.9
Gorai.002G110500 Gossypium raimondii HOM05D000198 ORTHO05D005702 1.1e-06 55.8 35 62.9
Duzib213G0040 Durio zibethinus HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 67.6
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 64.7
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 64.7
Lsat_1_v5_gn_6_70701 Lactuca sativa HOM05D000198 ORTHO05D035988 1.5e-06 55.5 37 62.2
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 73.5
Peaxi162Scf00153g00189 Petunia axillaris HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 64.7
PGR031G3164 Punica granatum HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 70.6
Rhsim06G0244300 Rhododendron simsii HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 67.6
Sp5g34490 Schrenkiella parvula HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 73.5
Sc06g0002010 Simmondsia chinensis HOM05D000198 ORTHO05D005702 1.5e-06 55.5 34 67.6
MSTRG.7092 Avicennia marina HOM05D000198 ORTHO05D005702 1.9e-06 55.1 34 67.6
Dinv42461 Davidia involucrata HOM05D000198 ORTHO05D005702 1.9e-06 55.1 34 67.6
Thhalv10018394m.g Eutrema salsugineum HOM05D000198 ORTHO05D005702 1.9e-06 55.1 34 73.5
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 1.9e-06 55.1 34 64.7
HanXRQChr11g0335861 Helianthus annuus HOM05D000198 ORTHO05D005702 1.9e-06 55.1 34 64.7
Lj2A9G44 Lonicera japonica HOM05D000198 ORTHO05D005702 2.5e-06 54.7 34 67.6
Nn8g40255 Nelumbo nucifera HOM05D000198 ORTHO05D005702 2.5e-06 54.7 34 64.7
Thecc.07G192200 Theobroma cacao HOM05D000198 ORTHO05D005702 2.5e-06 54.7 34 64.7
Ah.02g111790 Amaranthus hybridus HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 64.7
AT1G79440 Arabidopsis thaliana HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 70.6
A07p44510 Brassica napus HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 70.6
BraA07t31961Z Brassica rapa HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 70.6
CiPaw.11G057000 Carya illinoinensis HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 67.6
AUR62024987 Chenopodium quinoa HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 61.8
AUR62039633 Chenopodium quinoa HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 61.8
Nitab4.5_0000194g0150 Nicotiana tabacum HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 64.7
Nitab4.5_0013063g0020 Nicotiana tabacum HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 64.7
TAR626G1240 Trochodendron aralioides HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 67.6
unitig_26.g10057 Utricularia gibba HOM05D000198 ORTHO05D005702 3.3e-06 54.3 34 70.6
C06p53340 Brassica napus HOM05D000198 ORTHO05D005702 4.3e-06 53.9 34 67.6
BolC6t40351H Brassica oleracea HOM05D000198 ORTHO05D005702 4.3e-06 53.9 34 67.6
CsaV3_6G013440 Cucumis sativus L. HOM05D000198 ORTHO05D005702 4.3e-06 53.9 34 64.7
Sabra10G0133900 Salix brachista HOM05D000198 ORTHO05D005702 4.3e-06 53.9 34 67.6
Ciclev10004713m.g Citrus clementina HOM05D000198 ORTHO05D005702 5.6e-06 53.5 34 61.8
HanXRQChr11g0335851 Helianthus annuus HOM05D000198 ORTHO05D005702 5.6e-06 53.5 35 60.0
SGA_v2.0_scaffold7G03666 Striga asiatica HOM05D000198 ORTHO05D005702 5.6e-06 53.5 34 67.6
Aa31LG4G1580 Aethionema arabicum HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 70.6
Aqoxy1G01365 Aquilegia oxysepala HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 67.6
CAN.G524.27 Capsicum annuum HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 58.8
Migut.M01503 Erythranthe guttata HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 67.6
Solyc09g090700.1 Solanum lycopersicum HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 61.8
Sopen09g033640 Solanum pennellii HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 61.8
PGSC0003DMG400017144 Solanum tuberosum HOM05D000198 ORTHO05D005702 7.4e-06 53.1 34 61.8


User provided reference genes

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