Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 7.9e-163 577.0 284 100.0
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 5.1e-146 521.2 252 99.6
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 2.8e-136 488.8 252 92.5
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 3.7e-136 488.4 252 92.1
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 2.2e-133 479.2 252 89.7
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 2.2e-133 479.2 252 89.3
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 3.8e-133 478.4 252 89.7
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 6.5e-133 477.6 252 90.5
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.9e-132 476.1 252 89.3
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 5.1e-130 468.0 252 87.7
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.3e-129 465.3 237 93.7
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 6.3e-128 461.1 252 86.1
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 1.1e-127 460.3 252 86.5
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.1e-127 460.3 252 86.9
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 1.4e-127 459.9 256 87.1
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.8e-127 459.5 255 85.5
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 3.1e-127 458.8 254 85.4
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.1e-127 458.4 281 80.1
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 5.3e-127 458.0 255 85.5
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 7.0e-127 457.6 279 80.6
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 9.1e-127 457.2 256 86.7
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 9.1e-127 457.2 256 86.3
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 9.1e-127 457.2 255 85.5
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.2e-126 456.8 255 86.3
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.2e-126 456.8 255 86.3
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 1.2e-126 456.8 252 84.9
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.2e-126 456.8 256 85.5
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 1.5e-126 456.4 252 85.7
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.5e-126 456.4 255 85.5
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 1.5e-126 456.4 255 85.9
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 2.0e-126 456.1 256 85.9
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.6e-126 455.7 256 86.3
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 2.6e-126 455.7 252 84.9
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 3.5e-126 455.3 255 85.1
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 4.5e-126 454.9 253 87.0
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 4.5e-126 454.9 253 85.8
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 4.5e-126 454.9 256 85.2
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 5.9e-126 454.5 255 85.5
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 5.9e-126 454.5 255 84.7
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 7.7e-126 454.1 255 85.1
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 1.0e-125 453.8 256 85.9
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 1.0e-125 453.8 254 85.4
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.3e-125 453.4 256 86.3
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 1.3e-125 453.4 255 85.1
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 1.3e-125 453.4 253 86.6
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-125 453.4 253 86.6
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.3e-125 453.4 255 84.3
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.3e-125 453.4 255 85.1
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.3e-125 453.4 257 84.8
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 2.2e-125 452.6 256 85.9
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 2.2e-125 452.6 254 85.8
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 2.2e-125 452.6 255 85.1
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.9e-125 452.2 256 85.5
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 2.9e-125 452.2 252 84.9
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 3.8e-125 451.8 255 84.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 3.8e-125 451.8 255 84.7
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 3.8e-125 451.8 253 85.8
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.0e-125 451.4 254 85.0
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 5.0e-125 451.4 255 84.7
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 5.0e-125 451.4 255 85.1
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 6.5e-125 451.1 255 84.7
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 6.5e-125 451.1 255 84.7
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 6.5e-125 451.1 255 84.7
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 8.5e-125 450.7 253 86.2
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.5e-124 449.9 252 86.5
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.5e-124 449.9 254 85.8
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 2.5e-124 449.1 255 84.3
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 3.2e-124 448.7 253 86.2
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 3.2e-124 448.7 255 83.9
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 4.2e-124 448.4 255 84.7
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 7.2e-124 447.6 255 83.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 1.2e-123 446.8 256 83.2
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 3.6e-123 445.3 249 86.3
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 3.6e-123 445.3 249 86.3
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 6.1e-123 444.5 253 85.4
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 6.1e-123 444.5 255 83.9
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.1e-123 444.5 261 82.8
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 8.0e-123 444.1 253 85.4
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 1.0e-122 443.7 256 82.8
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 2.3e-122 442.6 255 83.5
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.5e-121 439.9 254 83.5
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.5e-121 439.9 255 81.6
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 2.6e-121 439.1 253 83.0
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 3.3e-121 438.7 255 83.1
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 7.5e-121 437.6 255 82.7
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 7.5e-121 437.6 255 82.0
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 9.7e-121 437.2 254 82.3
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 9.7e-121 437.2 255 81.6
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 9.7e-121 437.2 252 83.3
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.3e-120 436.8 255 82.0
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.3e-120 436.8 255 82.7
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 1.3e-120 436.8 255 82.0
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.7e-120 436.4 255 82.4
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 2.2e-120 436.0 253 83.0
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 4.8e-120 434.9 256 81.2
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 6.3e-120 434.5 254 81.1
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 8.2e-120 434.1 253 82.2
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 8.2e-120 434.1 255 82.4
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 8.2e-120 434.1 255 82.0
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.4e-119 433.3 257 79.8
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.4e-119 433.3 255 81.6
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.8e-119 433.0 256 80.9
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 2.4e-119 432.6 253 81.8
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.2e-118 430.3 255 81.2
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.9e-118 427.9 255 81.2
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.0e-117 424.9 239 85.8
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 6.5e-117 424.5 287 71.8
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 1.9e-116 422.9 257 78.2
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.9e-116 422.9 306 69.9
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 3.0e-114 415.6 283 72.4
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.5e-113 413.3 269 74.3
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 6.3e-112 407.9 252 80.6
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 5.4e-111 404.8 232 81.0
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 1.5e-108 396.7 294 70.1
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 3.6e-107 392.1 230 78.7
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 7.5e-105 384.4 267 71.2
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 1.7e-104 383.3 263 70.7
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 6.3e-104 381.3 227 77.1
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 3.1e-103 379.0 219 82.2
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 7.0e-103 377.9 260 73.1
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.7e-102 375.9 233 75.1
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 2.9e-101 372.5 262 68.7
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.3e-100 368.6 232 74.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 4.3e-100 368.6 232 74.6
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.2e-99 367.1 260 69.6
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 4.7e-99 365.2 262 67.2
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 6.1e-99 364.8 319 61.8
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 9.8e-97 357.5 260 68.5
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.7e-96 356.7 239 75.3
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 3.2e-95 352.4 255 69.0
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 4.1e-95 352.1 200 81.5
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 1.9e-87 326.6 250 68.0
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 3.4e-81 305.8 168 88.7
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 4.4e-81 305.4 161 88.8
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 4.9e-80 302.0 160 87.5
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 8.3e-80 301.2 252 57.9
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 1.1e-79 300.8 162 86.4
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 2.1e-78 296.6 226 68.6
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 3.9e-77 292.4 201 72.6
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.9e-72 275.4 175 75.4
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 7.8e-70 268.1 162 80.2
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 3.0e-69 266.2 281 46.3
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 6.2e-67 258.5 267 54.3
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 9.6e-60 234.6 135 83.0
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 1.3e-56 224.2 118 91.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 1.3e-53 214.2 116 87.9
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 3.0e-53 213.0 195 49.2
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 9.9e-49 198.0 102 92.2
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 1.3e-43 181.0 121 72.7
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 3.7e-43 179.5 165 58.2
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 8.1e-43 178.3 100 84.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 2.4e-42 176.8 211 45.5
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 4.5e-41 172.6 83 92.8
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 5.5e-39 165.6 84 85.7
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 1.1e-36 157.9 100 78.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 3.7e-35 152.9 89 79.8
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.3e-35 152.1 83 83.1
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.9e-33 145.6 89 76.4
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.6e-33 145.2 89 76.4
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 6.5e-32 142.1 77 83.1
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 8.5e-32 141.7 97 74.2
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.5e-31 140.2 89 74.2
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 3.6e-30 136.3 84 78.6
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.8e-29 134.0 81 77.8
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 3.0e-29 133.3 81 77.8
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.9e-28 130.6 81 76.5
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.7e-28 129.0 74 79.7
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.7e-28 129.0 74 79.7
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.7e-28 129.0 74 79.7
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.7e-28 129.0 74 79.7
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 7.4e-28 128.6 74 79.7
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 6.9e-26 122.1 74 75.7
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.9e-25 119.0 71 78.9
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 5.9e-25 119.0 75 76.0
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 5.9e-25 119.0 82 73.2
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 3.7e-11 73.2 42 81.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 2.0e-09 67.4 55 65.5
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 4.7e-06 56.2 29 93.1


User provided reference genes

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