Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 5.9e-180 634.0 310 100.0
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 1.2e-143 513.5 347 76.4
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 7.6e-135 484.2 347 71.8
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 4.2e-133 478.4 347 70.9
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 2.2e-126 456.1 350 67.4
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 9.0e-120 434.1 350 63.7
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 1.2e-119 433.7 349 64.8
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.9e-118 429.1 352 63.6
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 1.0e-115 420.6 352 63.9
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 8.2e-113 411.0 353 62.6
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 9.3e-109 397.5 348 59.5
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 4.2e-101 372.1 352 56.0
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 1.2e-100 370.5 356 55.3
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 2.1e-100 369.8 357 55.5
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 2.1e-100 369.8 356 54.8
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 2.1e-100 369.8 364 55.5
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.1e-100 368.2 357 52.9
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.0e-99 367.5 355 55.8
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 4.3e-98 362.1 357 52.9
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 1.3e-97 360.5 362 54.4
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 6.3e-97 358.2 354 54.0
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 1.1e-96 357.5 335 54.6
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 5.9e-95 351.7 349 53.6
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 5.0e-94 348.6 347 54.8
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 1.1e-93 347.4 355 53.8
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 1.1e-93 347.4 348 52.6
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 1.9e-93 346.7 346 54.0
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 2.5e-93 346.3 344 53.2
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 4.2e-93 345.5 354 52.8
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 7.2e-93 344.7 354 54.0
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 7.2e-93 344.7 357 53.5
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 2.7e-92 342.8 353 52.1
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 2.7e-92 342.8 366 51.1
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 6.1e-92 341.7 342 53.8
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 7.9e-92 341.3 350 51.1
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 6.7e-91 338.2 345 53.0
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 8.8e-91 337.8 344 53.5
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 1.5e-90 337.0 355 51.5
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 2.0e-90 336.7 349 52.4
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 3.3e-90 335.9 335 52.2
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 9.7e-90 334.3 342 51.5
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 9.7e-90 334.3 354 49.7
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.3e-89 334.0 346 50.0
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 2.8e-89 332.8 356 50.8
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 3.7e-89 332.4 352 52.0
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 1.1e-88 330.9 345 52.8
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 3.1e-88 329.3 342 52.3
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 5.3e-88 328.6 339 52.8
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 5.3e-88 328.6 338 52.1
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 6.9e-88 328.2 347 51.6
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 2.0e-87 326.6 340 51.2
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 2.6e-87 326.2 350 50.6
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.6e-87 326.2 332 53.6
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.6e-87 326.2 347 51.9
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 4.5e-87 325.5 357 51.5
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 7.7e-87 324.7 344 51.5
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 1.0e-86 324.3 351 50.4
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.7e-86 323.6 347 52.4
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.9e-86 322.8 347 50.7
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 1.9e-85 320.1 344 50.9
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 4.2e-85 318.9 342 51.2
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 7.2e-85 318.2 340 52.1
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 1.2e-84 317.4 331 50.5
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 5.2e-83 312.0 363 48.5
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 6.7e-83 311.6 338 51.5
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 6.7e-83 311.6 309 54.0
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 7.4e-82 308.1 343 49.9
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 7.4e-82 308.1 343 49.9
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 7.4e-82 308.1 383 47.8
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 9.7e-82 307.8 371 48.0
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 2.8e-81 306.2 341 49.9
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 8.2e-81 304.7 363 47.9
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 8.2e-81 304.7 311 52.1
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 4.5e-79 298.9 339 47.5
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 5.9e-79 298.5 361 47.9
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 5.9e-79 298.5 318 48.7
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 2.9e-78 296.2 323 51.4
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 2.9e-78 296.2 323 51.4
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 6.5e-78 295.0 354 44.1
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 1.1e-77 294.3 344 47.4
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 2.5e-77 293.1 347 48.4
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 4.2e-77 292.4 302 53.0
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.6e-76 290.4 335 47.2
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 6.1e-76 288.5 328 50.0
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 5.7e-74 282.0 273 53.5
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.3e-73 280.8 364 44.2
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 6.3e-73 278.5 317 49.5
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 1.4e-72 277.3 339 45.7
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 2.7e-68 263.1 321 44.5
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 6.3e-65 251.9 286 50.0
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 7.0e-64 248.4 349 43.0
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 3.5e-63 246.1 291 47.4
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 6.5e-62 241.9 275 48.4
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 1.5e-61 240.7 296 44.9
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 1.8e-59 233.8 267 50.2
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.0e-59 233.0 234 50.4
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 2.2e-57 226.9 223 51.6
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 3.1e-56 223.0 346 39.6
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.2e-55 221.1 310 41.6
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 1.6e-52 210.7 345 37.1
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 3.0e-46 189.9 186 54.3
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 1.9e-45 187.2 186 57.5
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 1.9e-45 187.2 186 57.5
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 5.8e-42 175.6 176 48.3
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 1.9e-40 170.6 293 38.9
Glyma.13G037950 Glycine max HOM05D001891 ORTHO05D005832 2.7e-39 166.8 127 70.9
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 1.7e-38 164.1 336 34.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 3.7e-33 146.4 108 68.5
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 9.2e-32 141.7 170 47.6
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 1.0e-30 138.3 162 48.1
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 3.6e-28 129.8 351 29.1
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.4e-27 127.9 160 45.6
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 4.0e-27 126.3 161 46.0
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 8.9e-27 125.2 139 46.8
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 1.7e-25 120.9 437 25.4
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 3.8e-25 119.8 311 31.8
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 1.9e-24 117.5 80 68.8
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 7.1e-24 115.5 66 80.3
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 7.8e-23 112.1 66 78.8
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 6.6e-22 109.0 65 83.1
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 1.5e-21 107.8 101 59.4
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 9.6e-21 105.1 66 75.8
SEGI_29039 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 5.8e-18 95.9 122 41.8
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 9.9e-18 95.1 120 40.0
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 4.9e-17 92.8 64 64.1
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 2.5e-13 80.5 76 59.2
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 2.5e-13 80.5 50 78.0
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 9.6e-13 78.6 76 56.6
arahy.Tifrunner.gnm1.ann1.XBI7UF Arachis hypogaea HOM05D003444 ORTHO05D003963 4.6e-07 59.7 42 73.8
MBI03_g41360_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 7.9e-07 58.9 46 60.9
MBI09_g25176_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 5.1e-06 56.2 43 60.5
MBI02_g40253_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 8.7e-06 55.5 43 60.5


User provided reference genes

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