Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1969.1 991 100.0
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1884.0 992 96.1
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1870.5 993 94.4
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1838.9 987 93.2
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1812.7 992 91.2
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1800.8 988 91.6
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1796.2 1014 89.5
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1789.2 999 90.0
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1761.1 1076 84.1
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1736.5 935 93.0
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1716.8 983 86.3
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1714.9 988 85.8
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1712.6 989 86.0
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1706.8 988 85.3
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1704.9 989 85.6
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1703.0 987 85.4
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1699.5 988 85.2
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1699.1 989 85.2
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1698.7 987 85.2
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1698.3 987 84.9
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1692.9 987 84.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1689.9 986 84.6
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1688.7 988 85.3
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1686.4 986 84.7
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1685.6 988 84.7
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 988 85.0
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1683.7 987 84.2
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1682.2 988 84.7
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1681.0 987 84.6
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1677.5 988 84.0
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1676.4 985 84.6
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1674.8 987 84.1
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1673.3 1010 82.5
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1672.9 1010 82.4
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1671.4 984 84.2
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1666.4 989 83.5
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1664.4 996 83.2
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1664.0 1010 82.3
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1661.4 991 82.9
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1660.6 983 83.7
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1660.2 998 82.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1643.6 1083 77.1
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1641.7 989 82.0
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 995 82.3
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1635.2 1027 80.5
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1632.8 987 81.7
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 988 81.5
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1628.2 986 81.1
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1626.7 988 82.4
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1623.2 988 80.9
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1621.3 990 80.8
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1620.9 989 81.0
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1619.8 975 82.1
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1617.8 996 81.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1617.4 987 81.4
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1617.1 988 80.7
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1617.1 971 81.5
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1616.7 992 80.8
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 989 80.3
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 990 80.5
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1614.0 989 81.2
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1609.0 1000 79.6
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1606.7 983 81.3
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1605.1 993 80.2
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 988 79.9
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 988 80.4
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1603.6 988 82.2
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1603.2 1003 79.4
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1600.9 977 81.1
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 987 80.9
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1598.6 978 81.2
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1591.2 1003 79.1
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1590.9 990 80.4
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1590.9 989 81.0
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1588.9 1005 78.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1587.8 987 80.2
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1582.0 987 79.6
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1578.9 987 79.5
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1577.8 997 79.5
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1567.4 1023 77.7
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1560.0 989 78.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1555.8 1020 77.6
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1550.4 1038 75.8
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1537.7 971 78.8
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1528.1 932 81.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1526.9 927 82.5
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1522.3 981 75.8
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1492.2 987 76.3
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1481.5 987 76.5
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1479.9 886 81.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1454.5 845 84.7
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1440.2 986 72.3
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1397.1 988 71.2
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1377.5 785 86.4
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1362.8 815 83.6
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1360.9 792 85.6
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1337.4 792 83.7
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1323.1 846 78.7
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1309.3 793 82.8
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1303.1 776 86.1
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1297.3 946 69.8
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1297.0 982 70.4
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1293.1 770 84.3
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1282.7 760 84.9
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1244.6 761 81.7
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1169.1 983 59.9
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1164.8 1007 59.0
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1120.9 761 75.8
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 7.2e-296 1020.8 643 79.6
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 7.9e-295 1017.3 988 52.1
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 5.3e-291 1004.6 790 62.8
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.2e-289 999.2 611 80.2
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 9.7e-285 983.8 671 73.5
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 3.2e-280 968.8 555 87.9
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.6e-271 939.9 519 90.8
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.4e-251 871.7 574 75.6
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 3.9e-249 865.5 611 69.1
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 2.1e-239 833.2 515 81.9
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 2.1e-231 806.6 418 95.2
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 2.0e-168 597.4 336 85.1
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 5.6e-147 526.2 334 78.4
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.5e-139 501.5 282 86.9
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 4.4e-128 463.4 1067 32.0
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 6.4e-119 433.0 249 85.9
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 3.9e-108 397.1 1012 29.1
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 2.4e-105 387.9 230 78.7
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.2e-103 381.3 1264 26.7
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 4.2e-102 377.1 231 75.8
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.9e-99 368.2 268 71.6
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 1.9e-99 368.2 204 86.3
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.6e-96 357.8 207 82.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.6e-93 347.1 198 86.4
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 4.0e-89 334.0 231 69.3
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 1.8e-81 308.5 178 82.0
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 3.9e-76 290.8 295 52.5
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.6e-69 268.9 441 38.3
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.7e-69 267.3 208 67.8
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 1.4e-68 265.8 153 80.4
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 1.2e-61 242.7 127 89.0
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 6.3e-58 230.3 152 72.4
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 1.2e-45 189.5 136 67.6
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 3.7e-42 177.9 163 58.9
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.9e-40 170.6 174 59.2
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.5e-38 166.0 121 72.7
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.8e-36 159.1 102 73.5
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.8e-36 159.1 129 61.2
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-34 151.8 94 75.5
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.5e-30 138.7 73 93.2
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 2.8e-29 135.2 87 73.6
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-27 129.4 81 72.8
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 9.8e-27 126.7 134 58.2
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.7e-26 125.9 130 58.5
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 2.9e-26 125.2 76 77.6
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 2.7e-24 118.6 104 62.5
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.3e-23 115.5 92 65.2
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.9e-23 114.8 91 65.9
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 5.0e-23 114.4 96 64.6
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.8e-21 108.6 80 76.2
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 6.4e-18 97.4 52 84.6
arahy.Tifrunner.gnm1.ann1.J1BTWL Arachis hypogaea HOM05D004263 ORTHO05D004931 2.4e-17 95.5 100 55.0
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-16 93.2 54 79.6
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 6.0e-16 90.9 85 56.5
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.6e-14 84.3 107 44.9
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.5e-11 76.3 160 33.8
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 2.0e-11 75.9 228 23.2
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 9.9e-11 73.6 47 61.7
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 2.2e-10 72.4 47 80.9
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 2.1e-08 65.9 50 66.0


User provided reference genes

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