Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 6.6e-148 528.5 584 100.0
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.1e-122 443.7 584 88.4
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.4e-121 441.0 585 86.2
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.2e-120 438.0 591 81.6
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 2.0e-120 437.2 582 88.7
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 3.0e-116 423.3 591 81.9
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 1.0e-111 408.3 562 92.0
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 3.8e-111 406.4 598 81.1
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 2.5e-110 403.7 583 77.0
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 5.1e-108 396.0 586 88.1
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 6.7e-108 395.6 591 86.5
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 9.6e-107 391.7 586 86.2
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 1.1e-102 378.3 585 75.4
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 5.7e-99 365.9 584 82.7
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.0e-96 357.5 583 69.1
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 7.7e-96 355.5 583 74.8
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.0e-95 355.1 583 79.1
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.0e-95 355.1 584 82.9
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 8.5e-95 352.1 585 73.3
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.1e-94 351.7 585 71.8
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 2.7e-93 347.1 583 74.4
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.0e-92 345.1 584 82.7
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 5.1e-92 342.8 581 68.2
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 6.7e-92 342.4 584 82.5
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 8.8e-92 342.0 584 73.1
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 5.7e-91 339.3 585 71.8
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.3e-90 338.2 585 73.5
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 3.7e-90 336.7 581 70.6
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 8.2e-90 335.5 598 74.4
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 1.1e-89 335.1 584 77.4
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.1e-89 333.6 585 71.5
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 9.1e-89 332.0 588 66.2
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.5e-88 331.3 582 72.3
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 5.9e-88 329.3 585 71.1
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 1.3e-87 328.2 585 70.9
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 5.0e-87 326.2 585 75.2
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 2.5e-86 323.9 585 72.8
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 5.5e-86 322.8 585 73.7
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.1e-85 320.9 585 73.5
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 2.7e-85 320.5 583 78.2
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.0e-84 318.5 583 68.6
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.4e-84 318.2 587 67.0
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 6.7e-84 315.8 564 77.8
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 1.1e-83 315.1 585 78.1
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 4.4e-83 313.2 585 70.8
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 4.4e-83 313.2 583 67.4
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 5.7e-83 312.8 581 70.7
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 6.3e-82 309.3 587 66.6
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.3e-79 301.6 504 73.6
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 3.8e-79 300.1 585 69.4
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 5.0e-79 299.7 588 66.5
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 8.5e-79 298.9 585 68.4
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.9e-78 297.7 584 63.2
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 3.2e-78 297.0 582 75.3
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 5.5e-78 296.2 587 72.2
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 7.2e-78 295.8 585 67.2
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 2.7e-77 293.9 585 67.2
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.7e-77 293.9 595 62.0
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.8e-76 291.2 584 78.3
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 8.8e-76 288.9 630 69.0
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 2.2e-74 284.3 582 76.8
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 4.8e-74 283.1 408 77.9
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 6.3e-74 282.7 509 72.5
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.1e-73 280.4 585 66.0
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 6.1e-69 266.2 584 63.5
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 8.0e-69 265.8 588 48.8
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 1.0e-68 265.4 424 78.8
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 3.4e-67 260.4 590 62.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 4.4e-67 260.0 602 69.1
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 5.7e-67 259.6 585 64.1
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 9.8e-67 258.8 580 64.5
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 1.3e-66 258.5 557 63.6
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 3.7e-66 256.9 590 62.4
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 3.7e-66 256.9 319 60.5
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 1.4e-65 255.0 510 60.4
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.8e-65 254.6 587 61.8
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 2.0e-64 251.1 598 60.4
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.5e-64 250.0 579 53.0
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.0e-63 248.8 585 65.3
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 8.5e-63 245.7 562 68.9
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 4.2e-62 243.4 590 60.8
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 9.4e-62 242.3 685 58.8
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 1.6e-61 241.5 535 63.9
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 4.7e-61 240.0 408 66.9
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 9.8e-59 232.3 585 61.4
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.7e-58 230.3 585 65.1
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.4e-57 228.4 510 65.5
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 3.1e-57 227.3 563 61.3
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 5.0e-55 219.9 589 63.5
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 6.6e-55 219.5 563 67.9
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 1.5e-54 218.4 562 61.4
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 2.1e-53 214.5 542 70.7
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.3e-52 211.1 643 53.3
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 2.3e-52 211.1 315 56.8
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 5.2e-52 209.9 594 59.4
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 8.9e-52 209.1 222 66.2
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.3e-50 205.3 328 63.1
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 3.2e-49 200.7 584 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 2.0e-48 198.0 591 53.1
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 5.9e-48 196.4 236 59.7
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 8.9e-44 182.6 557 34.8
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 4.6e-40 170.2 558 51.3
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 3.0e-39 167.5 382 52.1
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.1e-28 132.5 198 57.1
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 2.8e-21 107.8 90 66.7
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 2.8e-21 107.8 74 68.9
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 2.8e-21 107.8 74 68.9
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 6.2e-21 106.7 219 43.4
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 8.1e-21 106.3 74 67.6
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 1.8e-20 105.1 97 56.7
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 1.8e-20 105.1 74 67.6
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.8e-20 105.1 102 81.4
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 2.0e-19 101.7 74 63.5
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 2.4e-17 94.7 98 78.6
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.2e-17 94.0 76 67.1
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.2e-16 92.4 80 62.5
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 3.0e-15 87.8 52 75.0
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 1.1e-14 85.9 106 68.9
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 1.1e-14 85.9 106 68.9
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 1.1e-14 85.9 106 68.9
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.3e-14 84.3 74 52.7
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 2.1e-13 81.6 59 61.0
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 1.4e-12 79.0 46 84.8
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 1.7e-10 72.0 71 49.3
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 7.9e-08 63.2 74 44.6
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 3.9e-07 60.8 227 47.6


User provided reference genes

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