Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G274200 Glycine max HOM05D005020 ORTHO05D006017 3.6e-39 164.5 83 100.0
VMungo1127G0297 Vigna mungo HOM05D005020 ORTHO05D006017 2.2e-17 92.0 79 63.3
Phvul.011G128100 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 7.2e-16 87.0 79 60.8
arahy.Tifrunner.gnm1.ann1.74ZUP2 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-10 69.7 46 71.7
arahy.Tifrunner.gnm1.ann1.M920DF Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-10 69.7 46 71.7
Sabra16G0259800 Salix brachista HOM05D005020 ORTHO05D006017 2.7e-10 68.6 51 62.7
Potri.001G396700 Populus trichocarpa HOM05D005020 ORTHO05D006017 5.9e-10 67.4 51 62.7
Sabra10G0013700 Salix brachista HOM05D005020 ORTHO05D006017 2.9e-09 65.1 66 51.5
Haze_09410 Corylus avellana HOM05D005020 ORTHO05D006017 3.8e-09 64.7 61 55.7
ClCG05G009260 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.9e-08 62.4 51 64.7
Cc03_g02550 Coffea canephora HOM05D005020 ORTHO05D006017 2.5e-08 62.0 48 60.4
TWI09G1024 Tripterygium wilfordii HOM05D005020 ORTHO05D006017 2.5e-08 62.0 51 60.8
Cfa015516 Carpinus fangiana HOM05D005020 ORTHO05D006017 3.2e-08 61.6 50 60.0
CiPaw.01G155200 Carya illinoinensis HOM05D005020 ORTHO05D006017 3.2e-08 61.6 53 56.6
FAN12G3322 Fragaria x ananassa HOM05D005020 ORTHO05D006017 3.2e-08 61.6 57 54.4
vmacro08225 Vaccinium macrocarpon HOM05D005020 ORTHO05D006017 4.2e-08 61.2 81 44.4
Cpa.g.sc16.89 Carica papaya HOM05D005020 ORTHO05D006017 7.2e-08 60.5 51 58.8
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 7.2e-08 60.5 54 55.6
Potri.010G025900 Populus trichocarpa HOM05D005020 ORTHO05D006017 7.2e-08 60.5 51 58.8
AL3G17250 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
AL6G30140 Arabidopsis lyrata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
AT3G06320 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
AT5G18790 Arabidopsis thaliana HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BcaB01g04890 Brassica carinata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BcaB01g05274 Brassica carinata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BcaB08g36644 Brassica carinata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BcaC03g13617 Brassica carinata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BcaC04g18647 Brassica carinata HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
A03p09130 Brassica napus HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
A10p20820 Brassica napus HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
C03p10660 Brassica napus HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
C09p57700 Brassica napus HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BolC2t06915H Brassica oleracea HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BolC3t13542H Brassica oleracea HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BolC9t58641H Brassica oleracea HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BraA02t05468Z Brassica rapa HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BraA03t10236Z Brassica rapa HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
BraA10t44147Z Brassica rapa HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
Carub.0003s0575 Capsella rubella HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
Carub.0006s1709 Capsella rubella HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
CARHR080840 Cardamine hirsuta HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
CARHR194220 Cardamine hirsuta HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
Thhalv10015229m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
Thhalv10022246m.g Eutrema salsugineum HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
FvH4_4g16940 Fragaria vesca HOM05D005020 ORTHO05D006017 9.4e-08 60.1 50 58.0
FAN12G2862 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.4e-08 60.1 50 58.0
FAN17G2450 Fragaria x ananassa HOM05D005020 ORTHO05D006017 9.4e-08 60.1 50 58.0
SHI00341 Sapria himalayana HOM05D005020 ORTHO05D006017 9.4e-08 60.1 46 60.9
Sp3g05230 Schrenkiella parvula HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
Sp6g25600 Schrenkiella parvula HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
THA.LOC104827124 Tarenaya hassleriana HOM05D005020 ORTHO05D006017 9.4e-08 60.1 51 58.8
TPR.G15673 Trifolium pratense HOM05D005020 ORTHO05D006017 9.4e-08 60.1 53 52.8
Aa31LG5G16820 Aethionema arabicum HOM05D000373 ORTHO05D001146 1.2e-07 59.7 45 64.4
arahy.Tifrunner.gnm1.ann1.2XGW09 Arachis hypogaea HOM05D005020 ORTHO05D006017 1.2e-07 59.7 58 58.6
ClCG03G006340 Citrullus lanatus HOM05D005020 ORTHO05D006017 1.2e-07 59.7 50 58.0
CsaV3_1G037420 Cucumis sativus L. HOM05D005020 ORTHO05D006017 1.2e-07 59.7 50 58.0
FAN07G1494 Fragaria x ananassa HOM05D005020 ORTHO05D006017 1.2e-07 59.7 56 53.6
Sed0013068 Sechium edule HOM05D005020 ORTHO05D006017 1.2e-07 59.7 50 58.0
Sed0022382 Sechium edule HOM05D005020 ORTHO05D006017 1.2e-07 59.7 50 58.0
Manes.03G189700 Manihot esculenta HOM05D005020 ORTHO05D006017 1.6e-07 59.3 51 58.8
Manes.15G018900 Manihot esculenta HOM05D005020 ORTHO05D006017 1.6e-07 59.3 51 58.8
MELO3C019403.2 Cucumis melo HOM05D005020 ORTHO05D006017 2.1e-07 58.9 44 65.9
Duzib052G0657 Durio zibethinus HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Duzib151G1019 Durio zibethinus HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Gohir.A09G232900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Gohir.A10G103500 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Gohir.D09G234000 Gossypium hirsutum HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Gorai.006G256900 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Gorai.011G184100 Gossypium raimondii HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
HanXRQChr04g0113831 Helianthus annuus HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 54.9
Lalb_Chr19g0127231 Lupinus albus HOM05D005020 ORTHO05D006017 2.1e-07 58.9 50 54.0
Medtr1g015500 Medicago truncatula HOM05D005020 ORTHO05D006017 2.1e-07 58.9 53 50.9
Thecc.04G274600 Theobroma cacao HOM05D005020 ORTHO05D006017 2.1e-07 58.9 51 58.8
Thecc.07G096200 Theobroma cacao HOM05D005020 ORTHO05D006017 2.1e-07 58.9 47 59.6
arahy.Tifrunner.gnm1.ann1.X3M77N Arachis hypogaea HOM05D005020 ORTHO05D006017 2.7e-07 58.5 50 54.0
CsaV3_3G019510 Cucumis sativus L. HOM05D005020 ORTHO05D006017 2.7e-07 58.5 47 63.8
Glyma.14G127700 Glycine max HOM05D005020 ORTHO05D006017 2.7e-07 58.5 50 54.0
Glyma.17G206500 Glycine max HOM05D005020 ORTHO05D006017 2.7e-07 58.5 50 54.0
RcHm_v2.0_Chr4g0420521 Rosa chinensis HOM05D005020 ORTHO05D006017 2.7e-07 58.5 50 56.0
CANSAT56G0421 Cannabis sativa HOM05D005020 ORTHO05D006017 3.6e-07 58.2 50 56.0
CANSAT56G2258 Cannabis sativa HOM05D005020 ORTHO05D006017 3.6e-07 58.2 50 56.0
CANSAT78G0757 Cannabis sativa HOM05D005020 ORTHO05D006017 3.6e-07 58.2 50 56.0
MELO3C002800.2 Cucumis melo HOM05D005020 ORTHO05D006017 3.6e-07 58.2 66 47.0
DCAR_021248 Daucus carota HOM05D005020 ORTHO05D006017 3.6e-07 58.2 53 52.8
Migut.N00131 Erythranthe guttata HOM05D005020 ORTHO05D006017 3.6e-07 58.2 48 52.1
Psat6g030200 Pisum sativum HOM05D005020 ORTHO05D006017 3.6e-07 58.2 53 50.9
arahy.Tifrunner.gnm1.ann1.9N5T6G Arachis hypogaea HOM05D005020 ORTHO05D006017 4.7e-07 57.8 63 46.0
Gohir.D10G164900 Gossypium hirsutum HOM05D005020 ORTHO05D006017 4.7e-07 57.8 51 56.9
Prupe.1G144200 Prunus persica HOM05D005020 ORTHO05D006017 4.7e-07 57.8 50 56.0
GSVIVG01017833001 Vitis vinifera HOM05D005020 ORTHO05D006017 4.7e-07 57.8 51 58.8
CSS0014078 Camellia sinensis var. sinensis HOM05D005020 ORTHO05D006017 6.1e-07 57.4 51 56.9
ECA236G1604 Erigeron canadensis HOM05D001652 ORTHO05D001768 6.1e-07 57.4 60 53.3
MD13G1175500 Malus domestica HOM05D005020 ORTHO05D006017 6.1e-07 57.4 57 49.1
Oeu044803.1 Olea europaea HOM05D005020 ORTHO05D006017 6.1e-07 57.4 48 52.1
SGA_v2.0_scaffold89G27567 Striga asiatica HOM05D005020 ORTHO05D006017 6.1e-07 57.4 48 52.1
unitig_0.g344 Utricularia gibba HOM05D005020 ORTHO05D006017 6.1e-07 57.4 48 52.1
Dinv44441 Davidia involucrata HOM05D005020 ORTHO05D006017 8.0e-07 57.0 51 56.9
Hma1.2p1_0078F.1_g040900 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.0e-07 57.0 62 51.6
Hma1.2p1_1671F.1_g296720 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 8.0e-07 57.0 62 51.6
Lj1g0002998 Lotus japonicus HOM05D005020 ORTHO05D006017 8.0e-07 57.0 50 52.0
Phvul.001G054200 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 8.0e-07 57.0 50 52.0
Phvul.L006901 Phaseolus vulgaris HOM05D005020 ORTHO05D006017 8.0e-07 57.0 50 52.0
SalBow2G1326 Salvia bowleyana HOM05D005020 ORTHO05D006017 8.0e-07 57.0 48 52.1
Aqoxy5G00600 Aquilegia oxysepala HOM05D005020 ORTHO05D006017 1.0e-06 56.6 45 64.4
Ca_12921_v3 Cicer arietinum L. HOM05D005020 ORTHO05D006017 1.0e-06 56.6 50 52.0
Migut.N02789 Erythranthe guttata HOM05D005020 ORTHO05D006017 1.0e-06 56.6 48 52.1
Hma1.2p1_0643F.1_g194650 Hydrangea macrophylla HOM05D005020 ORTHO05D006017 1.0e-06 56.6 51 56.9
MBI19_g27958_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.0e-06 56.6 45 64.4
MBI19_g38516_MAGBIO Magnolia biondii HOM05D005020 ORTHO05D006017 1.0e-06 56.6 45 64.4
Os05g0452600 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.0e-06 56.6 52 53.8
Os05g0513500 Oryza sativa ssp. japonica HOM05D005020 ORTHO05D006017 1.0e-06 56.6 52 53.8
Hund19410 Selenicereus undatus HOM05D005020 ORTHO05D006017 1.0e-06 56.6 55 54.5
Nitab4.5_0000191g0090 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.4e-06 56.2 47 53.2
Nitab4.5_0001044g0170 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.4e-06 56.2 47 53.2
Nitab4.5_0003546g0060 Nicotiana tabacum HOM05D005020 ORTHO05D006017 1.4e-06 56.2 47 53.2
Peaxi162Scf00989g00014 Petunia axillaris HOM05D005020 ORTHO05D006017 1.4e-06 56.2 47 53.2
PGR004G1273 Punica granatum HOM05D005020 ORTHO05D006017 1.4e-06 56.2 51 52.9
Sc07g0000370 Simmondsia chinensis HOM05D005020 ORTHO05D006017 1.4e-06 56.2 55 50.9
Lj4g0020188 Lotus japonicus HOM05D005020 ORTHO05D006017 2.3e-06 55.5 63 41.3
MD10G1048100 Malus domestica HOM05D005020 ORTHO05D006017 2.3e-06 55.5 45 57.8
MD16G1177300 Malus domestica HOM05D005020 ORTHO05D006017 2.3e-06 55.5 50 52.0
EL10Ac1g01270 Beta vulgaris HOM05D005020 ORTHO05D006017 3.0e-06 55.1 45 57.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 3.0e-06 55.1 45 57.8
AUR62042176 Chenopodium quinoa HOM05D005020 ORTHO05D006017 3.0e-06 55.1 45 57.8
Mapoly0051s0101 Marchantia polymorpha HOM05D005020 ORTHO05D006017 3.0e-06 55.1 46 60.9
Duzib170G0405 Durio zibethinus HOM05D005020 ORTHO05D006017 4.0e-06 54.7 47 57.4
MCO12G337 Micromonas commoda HOM05D005020 ORTHO05D006017 4.0e-06 54.7 46 54.3
Nn3g21237 Nelumbo nucifera HOM05D005020 ORTHO05D006017 4.0e-06 54.7 45 60.0
PRCOL_00001856 Prasinoderma coloniale HOM05D005020 ORTHO05D006017 4.0e-06 54.7 47 53.2
Sopen04g008480 Solanum pennellii HOM05D005020 ORTHO05D006017 5.2e-06 54.3 65 41.5
RcHm_v2.0_Chr7g0218551 Rosa chinensis HOM05D005020 ORTHO05D006017 6.8e-06 53.9 50 52.0


User provided reference genes

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