Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 2.2e-194 683.3 790 100.0
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 3.7e-162 576.2 795 93.3
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 7.4e-118 429.1 795 85.7
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.0e-114 418.7 794 84.6
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 6.5e-106 389.4 804 82.5
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 3.1e-100 370.5 788 82.7
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 4.1e-100 370.2 793 81.8
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 7.2e-97 359.4 797 81.4
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.0e-82 310.1 678 88.2
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.5e-81 307.8 713 85.1
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 2.5e-81 307.8 713 85.1
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 5.5e-73 280.0 719 77.1
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.2e-70 272.3 688 84.2
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 2.0e-70 271.6 662 86.1
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.7e-70 270.0 662 86.1
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.4e-68 264.6 767 77.3
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 7.0e-68 263.1 694 81.8
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 9.1e-68 262.7 795 71.7
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 9.1e-68 262.7 682 81.5
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 1.2e-67 262.3 749 72.0
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.3e-66 258.8 682 84.2
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.3e-66 258.8 742 79.0
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 8.6e-66 256.1 773 76.6
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 1.9e-65 255.0 661 85.0
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 2.5e-65 254.6 763 64.7
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 5.5e-65 253.4 768 76.4
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 5.5e-65 253.4 707 76.4
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 2.8e-64 251.1 745 76.5
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 3.6e-64 250.8 334 74.3
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 6.1e-64 250.0 731 75.1
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 3.0e-63 247.7 681 77.8
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.0e-63 247.7 684 78.8
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 4.0e-63 247.3 679 78.2
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 8.8e-63 246.1 708 76.0
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 1.5e-62 245.4 762 76.2
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.5e-62 245.4 718 75.8
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 2.0e-62 245.0 344 72.7
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.7e-61 241.9 413 64.2
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 8.3e-61 239.6 317 72.6
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.1e-60 239.2 279 62.7
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 1.4e-60 238.8 706 75.4
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 3.1e-60 237.7 700 75.9
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 4.1e-60 237.3 671 79.0
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.1e-60 237.3 304 68.8
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 9.2e-60 236.1 794 70.0
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 3.5e-59 234.2 708 79.1
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 1.0e-58 232.6 421 52.5
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-57 229.2 660 75.3
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.5e-57 228.0 682 82.1
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.6e-56 225.3 356 69.1
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 2.1e-56 224.9 323 63.8
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 3.6e-56 224.2 689 76.2
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 4.7e-56 223.8 704 75.7
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.8e-55 221.9 280 69.6
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 3.0e-55 221.1 704 75.7
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 5.2e-55 220.3 696 68.2
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 5.2e-55 220.3 310 74.8
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 6.8e-55 219.9 146 73.3
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 2.6e-54 218.0 310 74.2
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 3.4e-54 217.6 309 62.8
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 4.4e-54 217.2 731 75.8
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 5.7e-54 216.9 233 52.4
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 4.1e-52 210.7 238 51.7
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.4e-52 210.3 289 77.2
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 7.0e-52 209.9 233 51.9
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.2e-51 209.1 308 73.1
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.6e-51 208.8 154 66.9
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 5.9e-51 206.8 306 55.6
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.7e-50 205.3 632 81.3
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 8.6e-50 203.0 310 64.5
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 1.5e-49 202.2 126 75.4
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 3.3e-49 201.1 141 66.7
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 4.3e-49 200.7 245 48.2
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 9.5e-49 199.5 662 81.4
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 9.5e-49 199.5 175 57.1
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 1.2e-48 199.1 128 71.9
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 1.6e-48 198.7 222 51.4
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 2.1e-48 198.4 161 61.5
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 2.1e-48 198.4 161 61.5
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.8e-48 198.0 161 61.5
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.8e-48 198.0 375 63.2
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 3.6e-48 197.6 241 45.6
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 3.6e-48 197.6 159 61.0
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.2e-48 196.8 365 62.2
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.1e-47 196.1 152 62.5
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.1e-47 196.1 781 69.3
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 2.3e-47 194.9 161 60.9
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 3.1e-47 194.5 161 60.9
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 4.0e-47 194.1 168 59.5
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 6.8e-47 193.4 708 75.4
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 8.9e-47 193.0 160 61.2
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.6e-46 191.4 161 60.2
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 4.4e-46 190.7 252 46.4
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 9.8e-46 189.5 203 49.3
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.7e-45 188.7 163 58.3
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 6.4e-45 186.8 184 52.2
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 5.4e-44 183.7 152 55.9
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 5.4e-44 183.7 128 68.0
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 1.0e-42 179.5 213 45.1
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 1.0e-42 179.5 587 89.9
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 2.5e-41 174.9 169 53.8
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 4.3e-41 174.1 167 55.7
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 3.7e-37 161.0 292 60.3
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 1.1e-36 159.5 110 68.2
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.2e-35 156.0 108 70.4
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 1.0e-34 152.9 281 60.1
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.9e-34 151.0 672 57.1
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 6.6e-34 150.2 110 66.4
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 4.3e-33 147.5 205 42.4
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 9.5e-33 146.4 323 53.6
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 1.6e-32 145.6 107 66.4
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 3.1e-31 141.4 176 44.9
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 6.8e-31 140.2 110 64.5
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 6.8e-31 140.2 108 63.9
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 1.5e-30 139.0 101 67.3
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 1.5e-30 139.0 89 77.5
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 1.7e-29 135.6 108 64.8
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.0e-27 127.1 105 60.0
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.3e-26 125.9 81 71.6
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 7.3e-25 120.2 110 53.6
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 1.2e-22 112.8 85 67.1
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 2.0e-22 112.1 110 52.7
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 1.2e-19 102.8 97 53.6
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 6.2e-16 90.5 61 70.5
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.4e-15 89.4 106 47.2
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 4.0e-15 87.8 91 50.5
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 9.0e-15 86.7 53 75.5
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 5.8e-14 84.0 59 74.6
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.2e-13 82.0 48 83.3
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 9.3e-12 76.6 51 66.7
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 1.3e-10 72.8 53 66.0
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.5e-09 69.3 96 31.2
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 3.3e-09 68.2 102 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 4.3e-09 67.8 100 41.0
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 4.3e-09 67.8 147 28.6
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 1.6e-08 65.9 132 30.3
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 3.7e-08 64.7 110 27.3
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 8.1e-08 63.5 110 29.1
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 2.4e-07 62.0 124 31.5
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.4e-07 62.0 116 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.1e-07 61.6 98 31.6
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 4.0e-07 61.2 123 29.3
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 4.0e-07 61.2 182 24.2
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 5.3e-07 60.8 110 31.8
TAR623G1677 Trochodendron aralioides HOM05D005973 ORTHO05D007285 6.9e-07 60.5 116 30.2
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 9.0e-07 60.1 119 31.9
Glyma.05G142300 Glycine max HOM05D006740 ORTHO05D008571 1.2e-06 59.7 119 28.6
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 1.2e-06 59.7 117 32.5
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.5e-06 59.3 154 24.0
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 1.5e-06 59.3 110 26.4
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 1.5e-06 59.3 120 32.5
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 1.5e-06 59.3 125 31.2
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 1.5e-06 59.3 116 31.9
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 2.0e-06 58.9 122 32.8
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 2.0e-06 58.9 110 25.5
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 2.0e-06 58.9 110 25.5
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 2.0e-06 58.9 110 25.5
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 2.0e-06 58.9 110 25.5
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 2.6e-06 58.5 159 28.3
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 2.6e-06 58.5 101 29.7
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 3.4e-06 58.2 116 28.4
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 4.5e-06 57.8 116 28.4
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 5.8e-06 57.4 116 29.3
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 5.8e-06 57.4 121 28.9
MD15G1385700 Malus domestica HOM05D006740 ORTHO05D008571 5.8e-06 57.4 110 25.5
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 7.6e-06 57.0 136 27.2
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 9.9e-06 56.6 116 28.4
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 9.9e-06 56.6 116 30.2
Glyma.08G098100 Glycine max HOM05D006740 ORTHO05D008571 9.9e-06 56.6 113 29.2


User provided reference genes

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