Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 4.6e-135 484.6 248 100.0
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 4.1e-123 444.9 248 89.1
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 1.7e-100 369.8 240 77.5
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 8.9e-94 347.4 220 80.5
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 2.3e-89 332.8 241 71.8
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 4.4e-85 318.5 239 71.5
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 2.7e-82 309.3 300 57.7
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 1.0e-81 307.4 238 69.3
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 3.0e-81 305.8 241 68.9
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 3.9e-81 305.4 294 58.2
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 5.0e-81 305.1 239 70.7
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 2.5e-80 302.8 241 66.8
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 1.1e-62 244.2 237 56.5
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 1.1e-62 244.2 207 60.9
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 3.4e-61 239.2 228 56.6
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 1.3e-60 237.3 264 52.3
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 3.8e-60 235.7 208 58.7
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 6.4e-60 235.0 246 52.8
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 1.4e-59 233.8 260 52.3
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 1.9e-59 233.4 235 52.8
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 2.4e-59 233.0 247 53.0
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 3.2e-59 232.6 202 59.4
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 5.4e-59 231.9 247 51.8
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 3.5e-58 229.2 235 52.3
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 3.5e-58 229.2 259 50.6
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 4.6e-58 228.8 235 51.9
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 6.0e-58 228.4 196 62.2
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 6.0e-58 228.4 240 53.8
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 7.8e-58 228.0 263 50.2
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 7.8e-58 228.0 192 59.4
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.0e-57 227.6 255 51.0
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 5.1e-57 225.3 196 62.2
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.6e-57 224.9 196 62.2
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.6e-57 224.9 196 62.2
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 6.6e-57 224.9 196 62.2
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.5e-56 223.8 196 61.7
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.5e-56 223.8 237 55.7
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 1.5e-56 223.8 236 52.1
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 2.5e-56 223.0 251 50.2
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 7.3e-56 221.5 246 50.8
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 9.6e-56 221.1 234 53.4
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 9.6e-56 221.1 246 50.8
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 1.2e-55 220.7 195 60.5
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.2e-55 220.7 196 61.2
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.2e-55 220.7 221 55.2
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 6.2e-55 218.4 198 59.1
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 8.1e-55 218.0 184 63.0
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 8.1e-55 218.0 209 57.9
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.1e-54 217.6 246 50.0
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.1e-54 217.6 246 50.0
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 1.1e-54 217.6 246 50.0
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 1.8e-54 216.9 196 60.2
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 4.0e-54 215.7 228 54.4
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 5.3e-54 215.3 213 52.6
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 1.5e-53 213.8 241 52.3
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 2.6e-53 213.0 230 53.0
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 3.4e-53 212.6 212 56.6
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 2.2e-52 209.9 195 57.4
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 3.8e-52 209.1 240 48.8
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 4.9e-52 208.8 215 54.0
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 1.1e-51 207.6 195 56.4
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.1e-51 207.6 230 51.3
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 1.9e-51 206.8 215 54.4
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 1.9e-51 206.8 196 56.6
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 5.4e-51 205.3 196 56.6
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 7.1e-51 204.9 208 53.8
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 2.1e-50 203.4 206 55.3
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 2.1e-50 203.4 196 57.7
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 3.5e-50 202.6 255 45.9
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 4.6e-50 202.2 222 52.7
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 6.0e-50 201.8 261 46.0
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 6.0e-50 201.8 210 52.4
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 2.3e-49 199.9 213 53.5
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 3.9e-49 199.1 230 48.7
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 6.6e-49 198.4 180 58.3
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 6.6e-49 198.4 180 58.3
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 4.3e-48 195.7 194 53.6
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 9.6e-48 194.5 180 57.2
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 1.3e-47 194.1 190 55.3
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 1.6e-47 193.7 179 57.0
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.6e-47 193.7 206 51.5
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 4.8e-47 192.2 192 54.7
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 6.2e-47 191.8 218 50.5
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 1.8e-46 190.3 189 55.0
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 1.5e-45 187.2 207 52.2
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 1.5e-45 187.2 195 52.8
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 2.0e-45 186.8 192 53.1
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 2.2e-44 183.3 235 46.0
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 6.4e-44 181.8 281 41.3
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 3.2e-43 179.5 185 50.8
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 5.4e-43 178.7 240 47.5
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 3.5e-42 176.0 211 48.8
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 2.5e-40 169.9 194 50.5
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 4.3e-40 169.1 174 52.9
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 9.6e-40 167.9 192 49.0
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 9.6e-40 167.9 194 49.5
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 9.6e-40 167.9 192 49.0
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 9.6e-40 167.9 192 49.0
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 9.6e-40 167.9 194 49.5
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 1.8e-38 163.7 175 53.1
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.3e-36 157.5 220 44.5
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 6.4e-36 155.2 124 63.7
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.9e-35 153.7 121 62.8
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 2.3e-33 146.7 204 44.6
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 2.5e-32 143.3 214 41.6
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 6.2e-31 138.7 116 61.2
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 1.3e-25 120.9 267 33.3
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 2.8e-23 113.2 94 59.6
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 2.8e-23 113.2 129 51.2
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 1.5e-21 107.5 192 37.0
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 2.6e-21 106.7 119 45.4
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 3.4e-21 106.3 120 48.3
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 1.8e-09 67.4 85 41.2
CBR_g41780 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-06 57.4 45 62.2


User provided reference genes

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