Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G154466 Glycine max HOM05D000068 ORTHO05D046714 9.1e-63 243.4 126 100.0
Glyma.10G073800 Glycine max HOM05D000068 ORTHO05D009371 5.8e-25 117.9 91 75.8
TPR.G9905 Trifolium pratense HOM05D000068 ORTHO05D009371 2.4e-23 112.5 90 67.8
arahy.Tifrunner.gnm1.ann1.32L6HG Arachis hypogaea HOM05D000068 ORTHO05D009371 4.2e-23 111.7 71 80.3
arahy.Tifrunner.gnm1.ann1.F7MRFZ Arachis hypogaea HOM05D000068 ORTHO05D009371 4.2e-23 111.7 71 80.3
Medtr1g059830 Medicago truncatula HOM05D000068 ORTHO05D009371 1.2e-22 110.2 90 66.7
Psat5g214480 Pisum sativum HOM05D000068 ORTHO05D046714 1.2e-22 110.2 95 64.2
Ca_00898_v3 Cicer arietinum L. HOM05D000068 ORTHO05D009371 6.0e-22 107.8 86 67.4
Lj5g0025633 Lotus japonicus HOM05D000068 ORTHO05D009371 7.8e-22 107.5 82 72.0
Actinidia05420 Actinidia chinensis HOM05D000068 ORTHO05D009371 4.3e-20 101.7 82 65.9
Lalb_Chr02g0154911 Lupinus albus HOM05D000068 ORTHO05D009371 1.6e-19 99.8 72 72.2
Sopen09g004660 Solanum pennellii HOM05D000068 ORTHO05D009371 6.2e-19 97.8 71 69.0
PGSC0003DMG401008875 Solanum tuberosum HOM05D000068 ORTHO05D009371 6.2e-19 97.8 71 69.0
Sed0018791 Sechium edule HOM05D000068 ORTHO05D009371 1.8e-18 96.3 82 61.0
Duzib093G0600 Durio zibethinus HOM05D000068 ORTHO05D009371 4.0e-18 95.1 82 59.8
Cfa016622 Carpinus fangiana HOM05D000068 ORTHO05D009371 1.2e-17 93.6 82 61.0
Peaxi162Scf00404g00221 Petunia axillaris HOM05D000068 ORTHO05D009371 1.5e-17 93.2 104 48.1
Solyc09g009910.4 Solanum lycopersicum HOM05D000068 ORTHO05D009371 1.5e-17 93.2 71 66.2
Cpa.g.sc5.7 Carica papaya HOM05D000068 ORTHO05D009371 2.0e-17 92.8 82 62.2
Gohir.A04G062000 Gossypium hirsutum HOM05D000068 ORTHO05D009371 2.6e-17 92.4 83 59.0
Rhsim03G0074500 Rhododendron simsii HOM05D000068 ORTHO05D009371 2.6e-17 92.4 82 57.3
Gorai.009G401200 Gossypium raimondii HOM05D000068 ORTHO05D009371 3.4e-17 92.0 82 59.8
Sp6g38810 Schrenkiella parvula HOM05D000068 ORTHO05D009371 3.4e-17 92.0 82 59.8
Dinv31696 Davidia involucrata HOM05D000068 ORTHO05D009371 4.4e-17 91.7 71 67.6
Nitab4.5_0000692g0100 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.4e-17 91.7 71 66.2
Haze_19627 Corylus avellana HOM05D000068 ORTHO05D009371 5.8e-17 91.3 82 59.8
vmacro07417 Vaccinium macrocarpon HOM05D000068 ORTHO05D009371 5.8e-17 91.3 71 66.2
CiPaw.10G010800 Carya illinoinensis HOM05D000068 ORTHO05D009371 7.6e-17 90.9 71 67.6
Oeu047858.1 Olea europaea HOM05D000068 ORTHO05D009371 9.9e-17 90.5 104 47.1
TAR633G0063 Trochodendron aralioides HOM05D000068 ORTHO05D009371 9.9e-17 90.5 84 59.5
Carub.0006s0287 Capsella rubella HOM05D000068 ORTHO05D009371 1.7e-16 89.7 82 58.5
Atru.chr8.1483 Acer truncatum HOM05D000068 ORTHO05D009371 2.2e-16 89.4 82 59.8
A10p32200 Brassica napus HOM05D000068 ORTHO05D009371 2.2e-16 89.4 82 58.5
BraA10t45263Z Brassica rapa HOM05D000068 ORTHO05D009371 2.2e-16 89.4 82 58.5
ClCG10G018880 Citrullus lanatus HOM05D000068 ORTHO05D009371 2.9e-16 89.0 82 56.1
AL6G13500 Arabidopsis lyrata HOM05D000068 ORTHO05D009371 3.8e-16 88.6 82 58.5
BcaC03g12973 Brassica carinata HOM05D000068 ORTHO05D009371 3.8e-16 88.6 82 58.5
C09p73000 Brassica napus HOM05D000068 ORTHO05D009371 3.8e-16 88.6 82 58.5
BolC9t60035H Brassica oleracea HOM05D000068 ORTHO05D009371 3.8e-16 88.6 82 58.5
CARHR209340 Cardamine hirsuta HOM05D000068 ORTHO05D009371 3.8e-16 88.6 82 58.5
Cc06_g05950 Coffea canephora HOM05D000068 ORTHO05D009371 3.8e-16 88.6 71 64.8
Sabra06G0163200 Salix brachista HOM05D000068 ORTHO05D009371 3.8e-16 88.6 82 61.0
AT5G03910 Arabidopsis thaliana HOM05D000068 ORTHO05D009371 4.9e-16 88.2 82 57.3
Thhalv10012955m.g Eutrema salsugineum HOM05D000068 ORTHO05D009371 4.9e-16 88.2 82 56.1
BcaC06g32095 Brassica carinata HOM05D000068 ORTHO05D009371 6.4e-16 87.8 82 57.3
COL.COLO4_29711 Corchorus olitorius HOM05D000068 ORTHO05D009371 8.4e-16 87.4 82 58.5
PSO384G0401 Papaver somniferum HOM05D000068 ORTHO05D009371 1.4e-15 86.7 83 56.6
RcHm_v2.0_Chr3g0474121 Rosa chinensis HOM05D000068 ORTHO05D009371 1.4e-15 86.7 80 58.8
MELO3C009480.2 Cucumis melo HOM05D000068 ORTHO05D009371 2.4e-15 85.9 82 53.7
TWI77G0227 Tripterygium wilfordii HOM05D000068 ORTHO05D009371 5.4e-15 84.7 82 58.5
Migut.J01023 Erythranthe guttata HOM05D000068 ORTHO05D009371 7.1e-15 84.3 118 41.5
Hund19921 Selenicereus undatus HOM05D000068 ORTHO05D009371 7.1e-15 84.3 82 51.2
CAN.G397.62 Capsicum annuum HOM05D000068 ORTHO05D009371 9.3e-15 84.0 58 70.7
HanXRQChr02g0032661 Helianthus annuus HOM05D000068 ORTHO05D009371 9.3e-15 84.0 71 57.7
GSVIVG01033860001 Vitis vinifera HOM05D000068 ORTHO05D009371 9.3e-15 84.0 56 76.8
FAN02G2951 Fragaria x ananassa HOM05D000068 ORTHO05D009371 1.2e-14 83.6 80 57.5
FAN14G1721 Fragaria x ananassa HOM05D000068 ORTHO05D009371 1.2e-14 83.6 80 57.5
Eucgr.A02657 Eucalyptus grandis HOM05D000068 ORTHO05D009371 2.1e-14 82.8 71 60.6
DCAR_020741 Daucus carota HOM05D000068 ORTHO05D009371 2.7e-14 82.4 82 52.4
Potri.006G211700 Populus trichocarpa HOM05D000068 ORTHO05D009371 2.7e-14 82.4 82 58.5
PGR004G2595 Punica granatum HOM05D000068 ORTHO05D009371 2.7e-14 82.4 71 60.6
FvH4_6g19080 Fragaria vesca HOM05D000068 ORTHO05D009371 3.5e-14 82.0 80 56.2
SGA_v2.0_scaffold31G12905 Striga asiatica HOM05D000068 ORTHO05D009371 3.5e-14 82.0 103 43.7
FAN14G4825 Fragaria x ananassa HOM05D000068 ORTHO05D009371 7.9e-14 80.9 80 56.2
PSO339G3788 Papaver somniferum HOM05D000068 ORTHO05D009371 7.9e-14 80.9 83 51.8
Lj2A138T48 Lonicera japonica HOM05D000068 ORTHO05D009371 1.0e-13 80.5 71 62.0
MD12G1026900 Malus domestica HOM05D000068 ORTHO05D009371 1.0e-13 80.5 70 57.1
Nn6g34878 Nelumbo nucifera HOM05D000068 ORTHO05D009371 2.3e-13 79.3 67 58.2
Prupe.7G104700 Prunus persica HOM05D000068 ORTHO05D009371 2.3e-13 79.3 70 57.1
Sc02g0000310 Simmondsia chinensis HOM05D000068 ORTHO05D009371 2.3e-13 79.3 71 57.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 3.0e-13 79.0 82 52.4
AUR62037027 Chenopodium quinoa HOM05D000068 ORTHO05D009371 3.9e-13 78.6 82 51.2
Aqoxy2G01127_Aqoxy2G01128 Aquilegia oxysepala HOM05D000068 ORTHO05D009371 6.6e-13 77.8 84 47.6
COL.COLO4_21840 Corchorus olitorius HOM05D000399 ORTHO05D000304 8.7e-13 77.4 79 57.0
ECA248G3626 Erigeron canadensis HOM05D000068 ORTHO05D009371 1.1e-12 77.0 67 56.7
Lsat_1_v5_gn_5_165121 Lactuca sativa HOM05D000068 ORTHO05D009371 1.9e-12 76.3 72 54.2
THA.LOC104816394 Tarenaya hassleriana HOM05D000068 ORTHO05D009371 1.9e-12 76.3 71 59.2
Ciclev10013660m.g Citrus clementina HOM05D000068 ORTHO05D009371 9.6e-12 73.9 67 58.2
MBI01_g00909_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D009371 9.6e-12 73.9 84 52.4
EL10Ac7g16904 Beta vulgaris HOM05D000068 ORTHO05D009371 1.3e-11 73.6 82 47.6
ATR0776G090 Amborella trichopoda HOM05D000068 ORTHO05D009371 1.1e-10 70.5 68 51.5
CDE06G2143 Ceratophyllum demersum HOM05D000068 ORTHO05D009371 3.1e-10 68.9 82 46.3
HPP92_023009 Vanilla planifolia HOM05D000068 ORTHO05D009371 3.1e-10 68.9 72 48.6
Os04g0413000 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D009371 7.6e-09 64.3 77 44.2
QL07p038656 Quercus lobata HOM05D000068 ORTHO05D009371 9.9e-09 63.9 82 46.3
AUR62006194 Chenopodium quinoa HOM05D000068 ORTHO05D009371 2.9e-08 62.4 54 59.3
SMO119G0430 Selaginella moellendorffii HOM05D000068 ORTHO05D009371 6.4e-08 61.2 70 51.4
AagrBONN_evm.TU.Sc2ySwM_344.4219 Anthoceros agrestis HOM05D000068 ORTHO05D009371 7.1e-07 57.8 78 43.6
Pp3c6_20190 Physcomitrium patens HOM05D000068 ORTHO05D009371 9.3e-07 57.4 68 52.9
CBR_g49221 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-06 56.2 67 44.8
vmacro06750 Vaccinium macrocarpon HOM05D000068 ORTHO05D008004 4.6e-06 55.1 65 44.6


User provided reference genes

Program Settings