Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 2.8e-200 701.8 375 100.0
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.5e-185 652.9 376 94.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.8e-160 568.9 376 83.0
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.6e-155 553.1 359 83.6
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 2.5e-132 476.1 382 73.6
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.3e-117 426.4 399 62.7
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 7.1e-111 404.8 440 58.2
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 6.8e-106 388.3 382 62.8
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.3e-104 384.0 375 63.5
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.1e-103 380.9 385 60.0
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.9e-103 380.2 394 61.4
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 2.7e-102 376.3 386 63.0
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.0e-101 374.4 382 62.3
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 3.8e-96 355.9 371 61.5
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 3.1e-82 309.7 378 54.5
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.5e-79 300.1 386 51.8
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.9e-76 290.4 406 48.8
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 4.3e-76 289.3 415 48.9
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 8.2e-75 285.0 388 49.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 7.6e-73 278.5 365 50.4
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.4e-71 274.2 375 48.5
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.0e-69 268.1 365 48.8
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 8.7e-69 265.0 389 47.6
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.3e-67 261.2 389 46.5
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 1.3e-67 261.2 384 47.1
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 1.8e-66 257.3 376 47.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.4e-66 256.9 367 45.8
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.4e-66 256.9 399 45.9
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.2e-65 254.6 380 47.4
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.5e-65 254.2 375 45.3
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.0e-65 253.8 396 45.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 3.4e-65 253.1 371 46.4
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 5.0e-64 249.2 387 45.7
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 5.0e-64 249.2 375 45.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 1.1e-63 248.1 366 45.6
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.9e-63 247.3 420 43.8
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.2e-63 246.5 391 45.5
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 7.2e-63 245.4 370 45.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 7.2e-63 245.4 382 44.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.2e-62 244.6 373 45.0
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.2e-62 244.6 400 42.8
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.2e-62 244.6 375 46.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.6e-62 244.2 388 45.9
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.1e-62 243.8 386 45.6
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 2.1e-62 243.8 372 43.5
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 4.6e-62 242.7 387 45.0
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.1e-62 242.3 377 46.7
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.3e-61 240.4 385 43.6
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.0e-61 240.0 395 42.8
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 5.1e-61 239.2 379 43.5
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 6.7e-61 238.8 400 43.0
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 6.7e-61 238.8 269 56.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.8e-61 238.4 375 46.7
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.1e-60 238.0 368 44.0
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.1e-60 238.0 370 46.8
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.5e-60 237.7 397 44.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.3e-60 236.5 389 44.2
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 7.4e-60 235.3 368 45.7
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.7e-60 235.0 368 44.0
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.7e-60 235.0 373 45.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 4.8e-59 232.6 375 46.7
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 6.3e-59 232.3 374 47.3
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.2e-59 231.9 366 45.6
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.4e-58 230.3 366 45.9
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 4.1e-58 229.6 367 45.2
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 5.3e-58 229.2 396 42.9
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.9e-58 228.8 365 45.2
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 5.9e-57 225.7 380 43.4
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.0e-56 224.9 389 42.9
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 8.5e-56 221.9 388 44.3
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 8.5e-56 221.9 415 40.0
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 1.1e-55 221.5 373 46.4
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.4e-55 221.1 399 42.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 4.7e-54 216.1 383 44.9
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 1.0e-53 214.9 382 42.4
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 1.8e-53 214.2 371 43.1
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.6e-52 210.3 388 44.8
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 4.4e-52 209.5 376 43.9
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.3e-51 208.0 373 42.6
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.3e-51 205.7 379 41.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 1.4e-50 204.5 332 45.2
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 3.1e-50 203.4 319 45.8
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.2e-49 201.4 372 42.7
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.5e-49 201.1 378 43.7
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 1.7e-48 197.6 323 45.5
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 4.2e-47 193.0 376 41.2
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.1e-46 190.7 370 40.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.7e-46 190.3 343 40.5
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 6.1e-46 189.1 389 38.6
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 2.3e-45 187.2 382 40.6
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.3e-45 187.2 391 40.4
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-44 184.9 324 43.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 1.1e-44 184.9 381 40.4
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.5e-44 184.5 395 41.5
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.5e-44 184.5 402 39.8
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 3.3e-44 183.3 399 39.8
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 9.7e-44 181.8 386 41.2
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 9.7e-44 181.8 386 41.2
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 2.8e-43 180.3 403 41.2
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.4e-42 177.9 408 40.2
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 7.0e-42 175.6 420 39.8
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 9.1e-42 175.3 386 40.4
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 1.6e-41 174.5 366 40.2
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-41 173.3 383 41.5
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.5e-41 173.3 383 41.5
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 3.5e-41 173.3 383 41.5
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 3.5e-41 173.3 397 39.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 4.5e-41 172.9 335 42.4
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.5e-41 172.9 401 40.1
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.9e-41 172.6 409 39.6
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 2.2e-40 170.6 402 35.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 3.8e-40 169.9 387 37.7
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 6.5e-40 169.1 379 37.7
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 3.2e-39 166.8 357 39.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 1.2e-38 164.9 172 57.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 8.0e-38 162.2 394 39.6
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.8e-37 161.0 384 40.1
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-37 161.0 384 40.1
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.8e-37 161.0 384 40.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.3e-37 160.6 356 39.9
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.8e-37 159.1 336 40.2
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.4e-36 156.8 199 49.7
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 9.8e-36 155.2 346 37.0
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.8e-35 153.7 387 40.3
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.8e-35 153.7 387 40.3
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 2.4e-34 150.6 392 37.8
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.1e-34 149.8 397 37.5
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 7.0e-34 149.1 204 49.0
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.7e-32 144.4 404 34.4
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.5e-31 139.4 400 34.8
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.2e-30 138.3 383 37.1
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 8.0e-30 135.6 398 36.2
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 2.3e-29 134.0 369 33.9
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.0e-29 133.3 268 42.5
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.8e-28 128.6 248 43.5
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.8e-27 127.1 397 34.3
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 4.6e-17 93.2 178 43.8
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.3e-16 91.7 225 39.6
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 1.7e-16 91.3 91 57.1
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 2.8e-14 84.0 380 27.6
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 7.5e-12 75.9 219 33.8
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.0e-08 65.5 304 31.9


User provided reference genes

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