Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.8e-286 988.0 542 100.0
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 7.6e-231 803.9 549 80.1
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 3.2e-181 639.0 572 63.8
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.2e-180 637.1 564 65.8
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.2e-180 637.1 559 65.3
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 5.5e-173 611.7 564 64.4
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.2e-172 610.5 544 63.6
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.2e-172 610.5 554 64.8
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.6e-172 610.1 553 63.5
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.8e-168 596.7 540 64.3
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 5.7e-154 548.5 565 57.7
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.2e-150 536.6 565 58.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.1e-148 530.0 564 57.3
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 8.0e-148 528.1 555 57.3
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 8.0e-148 528.1 545 59.4
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.0e-147 527.7 575 54.1
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.4e-147 527.3 548 57.8
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.4e-147 527.3 565 55.9
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.3e-147 526.6 544 58.8
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.8e-146 521.2 563 54.4
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 1.7e-145 520.4 565 54.5
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 2.2e-145 520.0 556 55.0
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.9e-145 518.8 562 55.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.1e-144 516.2 562 55.3
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.7e-143 513.1 551 53.0
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.7e-142 510.4 562 54.8
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 3.8e-142 509.2 577 52.0
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 5.0e-142 508.8 555 54.2
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 5.0e-142 508.8 551 52.6
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 6.6e-142 508.4 571 53.9
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 1.2e-140 504.2 560 55.7
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.1e-140 503.4 539 56.6
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 8.0e-140 501.5 574 56.3
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 4.0e-139 499.2 572 54.0
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 6.8e-139 498.4 613 51.4
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.2e-138 497.7 560 52.9
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.4e-138 496.1 580 51.6
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.5e-138 495.0 548 53.8
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.3e-137 491.5 543 54.0
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 8.3e-137 491.5 540 51.7
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.1e-136 491.1 542 53.5
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.4e-136 490.7 542 53.5
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.4e-136 490.0 560 53.8
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 3.2e-136 489.6 536 56.7
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 3.5e-135 486.1 560 52.1
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 1.0e-134 484.6 568 52.1
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 3.0e-134 483.0 545 53.9
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 8.6e-134 481.5 564 52.1
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 8.6e-134 481.5 532 52.8
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.5e-133 480.7 561 54.7
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 9.5e-133 478.0 564 52.0
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.0e-131 474.6 577 49.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.2e-130 471.1 552 53.4
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 9.2e-128 461.5 527 50.9
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.7e-127 459.9 522 52.5
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 5.6e-125 452.2 539 53.4
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-124 451.1 526 51.3
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.6e-124 450.7 531 53.3
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 2.1e-124 450.3 528 50.8
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.8e-124 449.9 542 49.4
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 2.8e-124 449.9 537 51.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 3.6e-124 449.5 543 50.3
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 3.6e-124 449.5 548 50.4
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.4e-123 447.6 537 49.7
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 3.1e-123 446.4 543 49.7
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.0e-122 443.7 549 50.8
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 9.8e-122 441.4 533 50.1
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 9.8e-122 441.4 533 50.1
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 6.4e-121 438.7 556 49.5
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 4.1e-120 436.0 566 48.9
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 7.8e-119 431.8 563 50.8
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 3.0e-118 429.9 544 53.3
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 3.9e-118 429.5 566 51.2
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.5e-117 427.6 579 47.0
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.5e-117 426.8 535 48.2
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.2e-116 424.5 484 51.2
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.2e-116 424.5 554 47.8
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.2e-116 424.5 576 47.4
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.0e-115 419.5 595 45.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 6.8e-115 418.7 534 48.3
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.0e-114 417.2 578 47.6
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 2.6e-114 416.8 572 48.1
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.6e-114 416.8 446 53.1
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 3.4e-114 416.4 586 49.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 3.4e-114 416.4 577 47.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 2.2e-113 413.7 557 49.7
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 6.4e-113 412.1 487 53.2
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.4e-112 411.0 583 46.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 3.2e-112 409.8 581 46.5
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 7.1e-112 408.7 595 45.0
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 7.1e-112 408.7 560 49.1
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.2e-111 407.9 606 43.7
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.5e-111 406.4 586 46.6
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.7e-110 404.1 577 45.6
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.3e-110 403.7 575 46.6
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.9e-109 400.6 545 45.7
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 4.3e-109 399.4 580 45.5
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.6e-108 397.5 534 47.4
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.8e-107 394.0 568 48.2
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.4e-104 383.6 516 51.0
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 7.3e-101 372.1 590 44.7
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 6.2e-100 369.0 313 60.7
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 4.9e-97 359.4 579 41.1
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.9e-96 357.5 573 42.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.2e-95 354.8 572 42.7
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.6e-95 352.8 554 42.2
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 7.9e-95 352.1 323 58.5
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 4.8e-92 342.8 593 39.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 5.3e-91 339.3 475 45.3
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.2e-90 338.2 722 37.0
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-90 337.4 516 43.8
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 8.7e-86 322.0 455 43.3
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 9.6e-85 318.5 539 39.9
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.5e-82 311.2 647 36.3
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 8.2e-76 288.9 431 43.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 5.1e-70 269.6 522 37.0
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.9e-69 267.7 158 91.8
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.3e-65 255.0 540 33.9
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 3.2e-64 250.4 274 50.0
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 3.6e-63 246.9 612 32.8
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 4.4e-61 240.0 209 57.4
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 2.2e-60 237.7 488 38.5
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 9.1e-59 232.3 422 43.6
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 3.2e-56 223.8 680 29.6
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.8e-52 209.9 551 33.2
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.4e-51 207.6 285 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 9.1e-51 205.7 650 30.0
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.0e-42 177.9 187 52.9
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.0e-37 161.4 290 34.8
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.4e-35 154.5 505 25.7
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 2.3e-33 147.9 139 53.2
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 3.0e-30 137.5 177 50.3
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 5.2e-30 136.7 277 34.3
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.0e-29 134.8 137 54.7
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.8e-29 132.5 544 27.2
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 6.6e-25 119.8 292 29.1
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 7.5e-21 106.3 86 59.3
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.5e-21 106.3 86 59.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.4e-19 101.3 165 38.8
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 1.1e-14 85.9 138 44.2
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 1.4e-06 58.9 145 33.8


User provided reference genes

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