Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 6.4e-200 700.7 385 100.0
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 6.6e-189 664.1 389 95.6
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 6.4e-184 647.5 389 93.3
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.3e-176 623.2 389 91.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 3.5e-174 615.1 389 90.0
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 3.6e-158 562.0 402 81.3
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 1.0e-157 560.5 402 81.1
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 8.7e-157 557.4 402 81.1
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.4e-154 550.1 403 80.4
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 6.9e-154 547.7 403 80.4
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 1.2e-153 547.0 403 80.1
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 3.4e-153 545.4 403 80.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 4.5e-153 545.0 403 80.1
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.0e-152 543.9 403 80.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 1.3e-152 543.5 404 77.5
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 2.9e-152 542.3 405 79.8
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.6e-145 519.2 403 74.9
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 7.2e-143 511.1 423 74.2
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 3.7e-139 498.8 404 74.8
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.9e-136 489.2 399 72.7
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 8.8e-125 451.1 408 67.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.2e-124 450.7 419 67.1
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.4e-122 443.7 405 67.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 1.6e-121 440.3 313 82.7
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.0e-121 439.9 422 64.9
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 7.7e-121 438.0 405 66.7
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 1.0e-120 437.6 399 67.9
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 2.3e-120 436.4 326 76.4
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.6e-118 430.3 408 66.9
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 2.8e-118 429.5 408 64.7
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.6e-118 429.1 407 66.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.7e-118 428.7 400 65.2
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 8.0e-118 427.9 405 68.1
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 8.0e-118 427.9 413 63.4
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 4.0e-117 425.6 420 63.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 8.8e-117 424.5 404 67.8
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.2e-116 424.1 432 62.3
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 3.4e-116 422.5 406 65.0
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 7.5e-116 421.4 406 66.0
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.3e-115 420.6 409 65.5
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 6.3e-115 418.3 414 63.8
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 6.3e-115 418.3 407 62.4
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 8.3e-115 417.9 346 73.7
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.4e-114 416.4 357 71.1
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.5e-113 412.1 403 64.8
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 7.8e-113 411.4 422 63.0
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.3e-112 409.8 400 64.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 2.9e-112 409.5 404 64.1
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 5.0e-112 408.7 408 64.2
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 8.6e-112 407.9 398 63.6
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 8.6e-112 407.9 399 64.4
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 2.5e-111 406.4 407 63.9
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.3e-111 406.0 403 63.8
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 7.3e-111 404.8 410 63.7
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 9.5e-111 404.4 440 61.1
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 1.6e-110 403.7 397 64.5
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.6e-110 403.7 404 63.1
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.1e-110 403.3 404 62.9
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 3.6e-110 402.5 415 62.4
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 6.1e-110 401.7 431 60.8
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.8e-109 400.2 406 63.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 4.4e-108 395.6 400 62.5
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 5.7e-108 395.2 404 61.4
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 5.7e-108 395.2 406 63.8
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 3.7e-107 392.5 404 62.1
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.9e-107 392.1 402 61.9
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.9e-107 392.1 399 61.9
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 6.4e-107 391.7 401 62.8
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.4e-106 389.8 412 61.9
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.4e-106 389.8 402 62.9
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 2.4e-106 389.8 405 63.7
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.0e-106 388.3 403 62.8
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.6e-105 387.1 410 62.2
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.6e-105 387.1 402 62.7
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 3.5e-105 386.0 433 60.0
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 4.6e-105 385.6 354 66.7
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.6e-105 385.6 400 61.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.6e-105 385.6 400 62.2
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.3e-104 384.0 402 62.4
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 1.3e-104 384.0 399 61.7
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.3e-104 383.3 354 66.9
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.3e-104 383.3 402 61.4
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 3.9e-104 382.5 407 62.2
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 8.6e-104 381.3 418 60.5
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.1e-103 380.9 354 66.7
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.9e-103 380.2 401 60.8
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.5e-103 379.8 404 60.9
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 4.3e-103 379.0 417 60.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 4.3e-103 379.0 400 61.8
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 5.6e-103 378.6 430 58.1
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 7.3e-103 378.3 402 60.9
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 7.3e-103 378.3 404 61.6
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 3.6e-102 375.9 420 59.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.8e-101 373.6 433 58.7
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.3e-101 373.2 341 68.9
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.1e-101 372.9 398 61.3
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 4.0e-101 372.5 431 57.8
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 6.8e-101 371.7 407 57.2
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.5e-100 370.5 398 60.6
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 3.4e-100 369.4 408 60.8
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 4.4e-100 369.0 435 57.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 9.8e-100 367.9 402 60.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.7e-99 365.9 426 57.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 6.4e-99 365.2 424 58.0
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 6.4e-99 365.2 424 58.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 8.3e-99 364.8 338 63.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.9e-98 363.6 423 57.4
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.5e-97 359.4 401 60.8
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 6.0e-97 358.6 409 58.7
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.0e-96 355.5 403 58.8
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 8.6e-96 354.8 407 58.5
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.2e-94 350.9 399 57.4
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.2e-94 350.9 329 66.3
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 8.9e-93 344.7 428 56.3
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 8.9e-93 344.7 398 59.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 1.1e-90 337.8 331 65.0
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 5.4e-90 335.5 442 53.6
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 2.3e-88 330.1 398 57.8
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 2.8e-86 323.2 396 54.5
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.2e-83 313.5 346 59.5
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 6.0e-81 305.4 325 60.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 2.2e-75 287.0 334 59.0
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.4e-74 284.3 372 51.3
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 4.2e-74 282.7 332 54.5
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.7e-72 277.3 421 46.8
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 5.8e-68 262.3 415 47.0
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 9.9e-68 261.5 380 51.1
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.4e-67 258.8 383 50.1
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.9e-65 251.9 395 50.1
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.1e-64 249.2 400 46.2
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.2e-57 228.0 241 62.7
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.8e-56 224.2 285 55.4
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 5.3e-53 212.6 206 61.2
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 3.9e-48 196.4 280 48.9
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 2.2e-46 190.7 222 56.3
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 4.8e-46 189.5 244 51.6
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 8.2e-46 188.7 261 53.6
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 8.2e-46 188.7 261 53.6
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.1e-45 186.8 216 57.9
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 2.2e-43 180.6 267 41.2
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-42 177.9 309 43.4
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 4.2e-42 176.4 309 43.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 8.2e-38 162.2 344 40.1
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.9e-34 151.0 105 81.0
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.2e-33 148.3 378 35.7
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 6.9e-29 132.5 217 45.6
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.5e-28 131.3 102 66.7
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.6e-25 120.2 190 45.3
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 6.1e-25 119.4 333 39.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 9.7e-23 112.1 149 58.4
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.8e-22 110.5 249 32.5
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.2e-09 68.6 232 26.3
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 6.1e-09 66.2 108 57.4
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 8.3e-06 55.8 119 35.3


User provided reference genes

Program Settings