Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 5.2e-136 487.6 235 100.0
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 3.6e-121 438.3 235 88.9
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 5.1e-107 391.3 238 78.2
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 6.6e-107 391.0 237 78.1
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.9e-94 349.0 238 71.0
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 4.8e-89 331.6 241 69.3
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 4.0e-88 328.6 240 67.1
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 9.0e-88 327.4 240 67.1
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.3e-86 323.6 239 65.3
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 1.7e-86 323.2 239 64.4
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.0e-78 297.4 235 60.9
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 7.1e-77 291.2 244 59.8
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 7.9e-76 287.7 205 67.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 3.0e-75 285.8 235 62.6
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-58 230.7 173 65.9
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 1.1e-50 204.1 203 48.3
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 1.1e-50 204.1 203 48.3
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 7.4e-50 201.4 197 47.7
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 2.2e-49 199.9 198 47.5
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.3e-48 195.3 199 45.7
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 9.1e-48 194.5 220 44.1
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.6e-47 193.7 224 42.9
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.6e-47 193.7 225 44.9
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.6e-47 193.7 222 44.1
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.0e-47 193.4 255 42.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 2.6e-47 193.0 238 43.3
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.6e-47 193.0 226 45.1
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 3.5e-47 192.6 195 47.2
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 4.5e-47 192.2 195 45.1
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.9e-47 191.8 197 46.2
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 5.9e-47 191.8 197 46.2
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.9e-47 191.8 199 44.7
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.0e-46 191.0 200 45.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.7e-46 190.3 246 40.2
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.2e-46 189.9 217 44.2
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.2e-46 189.9 217 44.2
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 2.9e-46 189.5 203 43.8
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 5.0e-46 188.7 196 47.4
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 5.0e-46 188.7 248 39.5
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.1e-45 187.6 194 46.4
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 3.2e-45 186.0 195 46.2
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 4.2e-45 185.7 206 42.7
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.5e-45 185.3 206 41.7
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 9.4e-45 184.5 199 43.2
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 9.4e-45 184.5 206 42.7
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-44 184.1 199 43.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 1.2e-44 184.1 196 45.9
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.6e-44 183.7 227 41.9
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.7e-44 183.0 199 43.2
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.7e-44 183.0 199 43.2
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.7e-44 183.0 200 43.5
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-43 181.0 210 41.9
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.4e-43 180.6 197 44.2
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.4e-43 180.6 220 39.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.8e-43 180.3 206 42.2
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.8e-43 180.3 200 44.0
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.0e-43 179.5 215 40.5
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 3.0e-43 179.5 194 45.4
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 4.0e-43 179.1 221 42.1
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 4.0e-43 179.1 200 44.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 4.0e-43 179.1 196 46.9
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 5.2e-43 178.7 220 41.4
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.2e-43 178.7 195 43.6
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 5.2e-43 178.7 205 40.5
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 6.7e-43 178.3 181 47.0
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 6.7e-43 178.3 224 40.6
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.1e-42 177.6 197 45.2
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 4.4e-42 175.6 241 39.0
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.7e-41 173.7 197 42.1
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 2.2e-41 173.3 195 42.6
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 2.8e-41 172.9 195 42.6
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 2.8e-41 172.9 195 42.6
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.8e-41 172.9 214 37.9
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.8e-41 172.9 194 43.3
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 2.8e-41 172.9 194 43.3
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 2.8e-41 172.9 208 41.3
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 4.8e-41 172.2 195 42.6
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 6.3e-41 171.8 195 42.1
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.4e-40 170.6 213 39.9
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.8e-40 170.2 169 48.5
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 2.4e-40 169.9 202 41.6
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 2.4e-40 169.9 195 43.1
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.1e-40 169.5 222 37.8
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 3.1e-40 169.5 195 42.6
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.1e-40 169.1 174 44.8
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 9.1e-40 167.9 220 38.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.6e-39 167.2 219 40.6
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.7e-39 166.4 208 35.6
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.5e-39 165.6 227 38.8
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 4.5e-39 165.6 216 37.0
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 5.9e-39 165.2 242 36.8
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.9e-39 165.2 209 42.6
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.3e-38 164.1 176 43.8
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.2e-38 163.3 193 42.5
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 2.2e-38 163.3 224 38.8
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.9e-38 162.9 198 39.4
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.9e-38 162.9 193 39.9
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 6.5e-38 161.8 199 38.2
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 6.5e-38 161.8 183 39.9
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 8.5e-38 161.4 227 37.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 8.5e-38 161.4 183 40.4
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.1e-37 161.0 198 38.9
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.1e-37 161.0 199 39.2
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 3.2e-37 159.5 228 39.9
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 4.2e-37 159.1 235 35.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.2e-37 159.1 188 39.4
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.5e-37 158.7 198 40.4
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.4e-37 157.9 230 38.7
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.1e-36 156.8 241 36.9
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 3.6e-36 156.0 206 38.8
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.7e-36 155.6 201 37.8
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 6.1e-36 155.2 224 38.8
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 6.1e-36 155.2 208 38.5
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.0e-35 154.5 208 38.9
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.3e-35 153.3 195 36.4
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 2.3e-35 153.3 220 38.6
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.2e-35 152.1 160 44.4
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 8.8e-35 151.4 201 37.8
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 4.4e-34 149.1 240 33.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 5.7e-34 148.7 176 46.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 2.2e-33 146.7 225 38.7
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 1.1e-32 144.4 138 50.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.8e-32 143.7 165 42.4
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 2.4e-32 143.3 207 36.2
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 2.4e-32 143.3 203 40.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.1e-32 142.9 213 33.8
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 4.1e-32 142.5 148 44.6
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 9.1e-32 141.4 203 34.5
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.0e-31 140.2 148 43.9
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 7.7e-31 138.3 196 39.8
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 1.0e-30 137.9 165 41.2
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.0e-30 137.9 208 38.0
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 5.0e-30 135.6 202 37.1
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 8.5e-30 134.8 141 44.7
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.9e-29 133.7 196 38.3
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.6e-28 130.6 215 31.2
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 4.7e-28 129.0 210 34.8
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.0e-27 127.9 226 32.7
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.0e-27 127.9 141 41.8
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.5e-26 124.0 205 33.2
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 4.9e-25 119.0 150 44.0
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.9e-25 119.0 122 46.7
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 4.1e-24 115.9 202 33.2
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 7.0e-24 115.2 117 42.7
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.4e-19 100.9 210 29.0
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 2.3e-19 100.1 166 31.9
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.8e-19 98.6 213 30.0
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.0e-18 97.1 208 26.4
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 1.7e-17 94.0 254 27.2
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.2e-17 93.6 181 32.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.6e-15 87.4 94 44.7
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 5.6e-13 79.0 122 35.2
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 7.3e-13 78.6 122 35.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 9.5e-13 78.2 175 29.1
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-08 62.4 69 43.5
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 9.2e-08 61.6 184 23.9
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 6.0e-07 58.9 82 35.4
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 3.9e-06 56.2 103 36.9


User provided reference genes

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