Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 0.0e+00 3686.0 2021 100.0
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 0.0e+00 3005.7 1942 85.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 0.0e+00 2490.3 1958 75.0
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 0.0e+00 2414.0 1965 72.9
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 0.0e+00 1757.3 2236 55.2
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 0.0e+00 1647.1 2079 54.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 0.0e+00 1602.0 2037 53.4
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 0.0e+00 1601.3 1987 54.7
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 0.0e+00 1562.0 1920 54.8
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 0.0e+00 1543.1 1939 53.0
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 1385.5 2016 49.7
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 0.0e+00 1372.8 2029 49.3
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.3e-272 944.5 2024 40.6
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 2.6e-268 930.2 1918 41.8
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 4.6e-257 892.9 1942 40.9
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 1.1e-253 881.7 1977 40.1
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 9.4e-234 815.5 1915 38.6
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 9.1e-221 772.3 1940 38.2
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 3.9e-216 756.9 1954 37.9
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 3.3e-215 753.8 1909 38.1
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 9.7e-215 752.3 1920 37.4
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 1.3e-214 751.9 1947 38.0
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 1.3e-214 751.9 1972 37.1
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.7e-214 751.5 1237 46.2
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.8e-214 750.0 1258 45.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.4e-213 748.4 1960 36.8
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.1e-205 722.2 1912 36.7
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 1.0e-203 715.7 1821 37.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.9e-203 714.1 1879 36.9
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 7.2e-202 709.5 1882 36.5
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 2.1e-201 708.0 1913 36.6
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 4.7e-201 706.8 1949 36.3
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.5e-199 701.8 1872 36.3
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.4e-199 700.7 1287 42.7
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 5.7e-199 699.9 1934 36.3
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 7.0e-197 693.0 1926 36.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 2.0e-196 691.4 1951 33.6
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 2.0e-191 674.9 1902 36.3
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.9e-190 670.2 1896 35.8
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 5.9e-188 663.3 803 55.4
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 3.6e-185 654.1 1966 35.7
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 7.5e-183 646.4 1192 42.9
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.2e-181 641.0 2024 34.5
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.2e-180 639.0 1815 35.3
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.7e-180 637.9 1954 35.3
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 6.0e-180 636.7 1934 34.4
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 4.4e-175 620.5 912 45.9
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 8.1e-169 599.7 781 53.6
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.5e-167 595.5 790 53.0
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 3.7e-166 590.9 1986 33.5
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.4e-165 589.0 2028 32.9
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.4e-165 588.2 731 54.9
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.7e-163 582.0 726 55.6
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.1e-163 580.5 1880 34.4
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.2e-159 569.3 1883 34.0
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 2.5e-154 551.6 935 45.8
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.1e-153 548.5 1909 33.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 1.5e-151 542.3 1078 41.8
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 6.4e-150 537.0 1968 31.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 8.4e-150 536.6 963 43.4
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.6e-145 521.2 1905 32.0
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 4.9e-142 510.8 1859 32.4
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 3.2e-141 508.1 1940 32.0
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 7.9e-140 503.4 1182 38.2
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.3e-138 498.0 954 42.3
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 4.3e-138 497.7 809 46.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 6.9e-136 490.3 919 44.7
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.5e-135 489.2 810 47.5
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 2.0e-135 488.8 923 42.7
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 2.0e-135 488.8 786 47.3
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.7e-134 485.7 1851 32.0
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.5e-132 478.0 877 43.7
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 1.3e-131 476.1 1975 29.8
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.8e-131 475.7 1975 29.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 2.3e-131 475.3 937 41.7
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 6.7e-131 473.8 818 42.8
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.6e-129 469.2 774 45.2
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 5.3e-128 464.2 774 44.8
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.5e-127 462.6 832 44.6
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.6e-127 461.8 1887 29.0
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.0e-126 459.9 885 44.1
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.4e-125 456.1 477 63.1
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.2e-124 453.0 868 41.4
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 3.5e-124 451.4 1647 32.1
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 6.1e-124 450.7 959 40.5
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.0e-123 449.9 830 45.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.3e-123 449.5 846 42.0
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 3.1e-120 438.3 1995 30.1
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 6.9e-120 437.2 1878 30.1
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.5e-119 436.0 1292 35.1
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.6e-119 435.3 822 45.9
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.6e-116 426.0 638 45.5
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 8.8e-115 420.2 1657 31.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 6.9e-112 410.6 1870 30.8
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 4.5e-111 407.9 1216 34.8
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.0e-110 404.4 830 37.5
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.0e-110 404.4 1704 29.2
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.4e-107 396.4 634 42.9
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 2.0e-106 392.5 1941 29.3
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.6e-106 392.1 545 51.4
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 7.7e-103 380.6 1849 27.3
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.3e-102 379.8 1899 29.4
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 6.5e-102 377.5 810 40.9
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 1.5e-101 376.3 792 42.4
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.4e-99 369.8 891 37.7
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 3.8e-94 351.7 874 36.5
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 8.8e-91 340.5 499 42.9
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 4.5e-87 328.2 842 38.7
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 3.1e-80 305.4 573 44.3
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.9e-79 301.2 631 42.5
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 8.3e-73 280.8 580 36.2
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 1.4e-72 280.0 332 56.9
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 6.8e-67 261.2 254 55.9
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 8.6e-54 217.6 276 58.3
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 1.7e-49 203.4 508 36.8
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 1.9e-48 199.9 899 31.3
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.1e-47 196.4 210 67.6
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.3e-45 188.7 136 73.5
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.6e-44 185.7 1543 25.3
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 5.4e-40 171.8 1494 24.2
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 3.5e-39 169.1 758 32.2
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.0e-38 167.5 207 46.4
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 3.1e-35 156.0 99 79.8
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.7e-33 150.2 447 32.2
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 2.9e-33 149.4 705 27.4
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 9.3e-32 144.4 207 42.0
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 4.2e-24 119.0 406 30.3
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.8e-22 113.6 137 43.8
Psat5g224880 Pisum sativum HOM05D038204 ORTHO05D001752 6.7e-22 111.7 113 54.0
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.7e-22 111.3 134 43.3
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 4.3e-21 109.0 113 54.9
Psat2g029240 Pisum sativum HOM05D002119 ORTHO05D003631 1.8e-19 103.6 99 54.5
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 1.3e-17 97.4 86 64.0
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 4.2e-16 92.4 248 31.5
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.7e-15 89.7 112 44.6
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 2.1e-12 80.1 705 26.7
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.2e-10 74.3 131 42.7
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.2e-09 70.1 157 32.5
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 1.2e-07 64.3 494 25.7


User provided reference genes

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