Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G218100 Glycine max HOM05D002169 ORTHO05D006577 6.1e-208 727.2 369 100.0
Glyma.04G221900 Glycine max HOM05D002169 ORTHO05D006577 2.3e-186 655.6 344 97.4
Phvul.009G142600 Phaseolus vulgaris HOM05D002169 ORTHO05D006577 1.3e-178 629.8 344 90.7
Glyma.06G143500 Glycine max HOM05D002169 ORTHO05D006577 8.6e-178 627.1 350 90.3
arahy.Tifrunner.gnm1.ann1.DGN8CB Arachis hypogaea HOM05D002169 ORTHO05D006577 8.1e-176 620.5 344 88.7
arahy.Tifrunner.gnm1.ann1.L3E9Q0 Arachis hypogaea HOM05D002169 ORTHO05D006577 1.2e-174 616.7 344 88.1
Lj4g0016756 Lotus japonicus HOM05D002169 ORTHO05D006577 1.7e-173 612.8 344 88.4
TPR.G13725 Trifolium pratense HOM05D002169 ORTHO05D006577 3.5e-171 605.1 344 88.1
Psat4g104600 Pisum sativum HOM05D002169 ORTHO05D006577 3.0e-170 602.1 344 87.5
Ca_02844_v3 Cicer arietinum L. HOM05D002169 ORTHO05D006577 3.9e-170 601.7 344 87.5
Lalb_Chr10g0097551 Lupinus albus HOM05D002169 ORTHO05D006577 3.9e-170 601.7 344 88.1
Medtr8g073170 Medicago truncatula HOM05D002169 ORTHO05D006577 8.4e-165 583.9 344 84.0
CiPaw.07G001100 Carya illinoinensis HOM05D002169 ORTHO05D006577 1.6e-160 569.7 345 82.9
GSVIVG01022300001 Vitis vinifera HOM05D002169 ORTHO05D006577 2.1e-160 569.3 345 82.9
Dinv28311 Davidia involucrata HOM05D002169 ORTHO05D006577 1.8e-159 566.2 345 82.6
QL06p053209 Quercus lobata HOM05D002169 ORTHO05D006577 5.3e-159 564.7 345 81.4
Lj4A238G77 Lonicera japonica HOM05D002169 ORTHO05D006577 5.8e-158 561.2 345 80.9
Dinv40201 Davidia involucrata HOM05D002169 ORTHO05D006577 7.6e-158 560.8 345 81.7
Actinidia22888 Actinidia chinensis HOM05D002169 ORTHO05D006577 8.4e-157 557.4 359 78.0
MD15G1229000 Malus domestica HOM05D002169 ORTHO05D006577 8.4e-157 557.4 344 79.9
CANSAT64G0090 Cannabis sativa HOM05D002169 ORTHO05D006577 2.4e-156 555.8 344 79.1
Prupe.7G185100 Prunus persica HOM05D002169 ORTHO05D006577 2.4e-156 555.8 345 79.1
PGR004G0941 Punica granatum HOM05D002169 ORTHO05D006577 3.2e-156 555.4 345 79.7
TAR381G0949 Trochodendron aralioides HOM05D002169 ORTHO05D006577 4.2e-156 555.1 345 79.4
Actinidia17335 Actinidia chinensis HOM05D002169 ORTHO05D006577 7.1e-156 554.3 345 80.6
CSS0008574 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 9.3e-156 553.9 345 80.9
MD02G1113900 Malus domestica HOM05D002169 ORTHO05D006577 1.6e-155 553.1 344 78.8
Sc10g0009280 Simmondsia chinensis HOM05D002169 ORTHO05D006577 3.5e-155 552.0 346 80.6
Hund19690 Selenicereus undatus HOM05D002169 ORTHO05D006577 1.3e-154 550.1 344 79.4
Eucgr.J00205 Eucalyptus grandis HOM05D002169 ORTHO05D006577 1.7e-154 549.7 345 79.7
DCAR_019080 Daucus carota HOM05D002169 ORTHO05D006577 3.9e-154 548.5 345 78.6
Aqoxy6G01571 Aquilegia oxysepala HOM05D002169 ORTHO05D006577 8.7e-154 547.4 345 78.6
Cc07_g12000 Coffea canephora HOM05D002169 ORTHO05D006577 8.7e-154 547.4 345 77.7
CSS0019965 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 1.1e-153 547.0 345 80.3
ClCG02G005730 Citrullus lanatus HOM05D002169 ORTHO05D006577 7.3e-153 544.3 345 77.7
CsaV3_7G008800 Cucumis sativus L. HOM05D002169 ORTHO05D006577 7.3e-153 544.3 345 78.3
Manes.01G156500 Manihot esculenta HOM05D002169 ORTHO05D006577 9.6e-153 543.9 344 77.3
Hma1.2p1_0085F.1_g044520 Hydrangea macrophylla HOM05D002169 ORTHO05D006577 2.1e-152 542.7 345 79.4
Sed0000096 Sechium edule HOM05D002169 ORTHO05D006577 2.8e-152 542.3 345 77.4
MELO3C018432.2 Cucumis melo HOM05D002169 ORTHO05D006577 4.8e-152 541.6 345 79.1
vmacro20619 Vaccinium macrocarpon HOM05D002169 ORTHO05D006577 4.8e-152 541.6 345 77.1
Cpa.g.sc6.358 Carica papaya HOM05D002169 ORTHO05D006577 6.2e-152 541.2 345 76.2
Rhsim10G0192800 Rhododendron simsii HOM05D002169 ORTHO05D006577 6.2e-152 541.2 345 77.1
Atru.chr3.27 Acer truncatum HOM05D002169 ORTHO05D006577 1.1e-151 540.4 344 76.7
Cfa007098 Carpinus fangiana HOM05D002169 ORTHO05D006577 1.1e-151 540.4 344 78.8
Migut.L00778 Erythranthe guttata HOM05D002169 ORTHO05D006577 1.4e-151 540.0 344 77.3
Ciclev10024818m.g Citrus clementina HOM05D002169 ORTHO05D006577 2.4e-151 539.3 344 78.8
MSTRG.3634 Avicennia marina HOM05D002169 ORTHO05D006577 5.3e-151 538.1 346 77.2
AUR62003736 Chenopodium quinoa HOM05D002169 ORTHO05D006577 5.3e-151 538.1 344 77.9
RcHm_v2.0_Chr2g0096961 Rosa chinensis HOM05D002169 ORTHO05D006577 2.0e-150 536.2 346 76.6
HanXRQChr14g0443111 Helianthus annuus HOM05D002169 ORTHO05D006577 4.5e-150 535.0 345 76.5
ATR0807G141 Amborella trichopoda HOM05D002169 ORTHO05D006577 5.8e-150 534.6 345 75.9
AUR62016565 Chenopodium quinoa HOM05D002169 ORTHO05D006577 9.9e-150 533.9 344 77.3
Nitab4.5_0001467g0120 Nicotiana tabacum HOM05D002169 ORTHO05D006577 9.9e-150 533.9 344 75.9
THA.LOC104819712 Tarenaya hassleriana HOM05D002169 ORTHO05D006577 4.9e-149 531.6 344 75.9
Lsat_1_v5_gn_2_73920 Lactuca sativa HOM05D002169 ORTHO05D006577 6.4e-149 531.2 346 76.0
ECA238G3790 Erigeron canadensis HOM05D002169 ORTHO05D006577 1.4e-148 530.0 346 76.3
Nitab4.5_0008533g0010 Nicotiana tabacum HOM05D002169 ORTHO05D006577 1.9e-148 529.6 344 75.0
FAN19G1591 Fragaria x ananassa HOM05D002169 ORTHO05D006577 2.4e-148 529.3 345 74.8
Solyc02g082460.3 Solanum lycopersicum HOM05D002169 ORTHO05D006577 4.2e-148 528.5 344 76.2
Sopen02g027150 Solanum pennellii HOM05D002169 ORTHO05D006577 4.2e-148 528.5 344 76.2
SalBow6G5571 Salvia bowleyana HOM05D002169 ORTHO05D006577 5.4e-148 528.1 371 72.8
FvH4_1g10170 Fragaria vesca HOM05D002169 ORTHO05D006577 1.6e-147 526.6 345 74.5
Oeu012456.1 Olea europaea HOM05D002169 ORTHO05D006577 1.6e-147 526.6 345 77.4
Potri.007G059100 Populus trichocarpa HOM05D002169 ORTHO05D006577 2.1e-147 526.2 344 75.9
Duzib147G0840 Durio zibethinus HOM05D002169 ORTHO05D006577 3.5e-147 525.4 347 75.8
CAN.G1238.30 Capsicum annuum HOM05D002169 ORTHO05D006577 1.0e-146 523.9 344 75.0
Gohir.A07G171800 Gossypium hirsutum HOM05D002169 ORTHO05D006577 1.0e-146 523.9 347 75.5
COL.COLO4_22562 Corchorus olitorius HOM05D002169 ORTHO05D006577 1.8e-146 523.1 347 74.9
SGA_v2.0_scaffold132G34513 Striga asiatica HOM05D002169 ORTHO05D006577 1.8e-146 523.1 345 74.8
Thhalv10022534m.g Eutrema salsugineum HOM05D002169 ORTHO05D006577 2.3e-146 522.7 345 73.9
SGA_v2.0_scaffold14G07128 Striga asiatica HOM05D002169 ORTHO05D006577 3.0e-146 522.3 345 75.1
CARHR107670 Cardamine hirsuta HOM05D002169 ORTHO05D006577 3.9e-146 521.9 344 74.7
Thecc.01G003600 Theobroma cacao HOM05D002169 ORTHO05D006577 3.9e-146 521.9 347 75.2
FAN23G0161 Fragaria x ananassa HOM05D002169 ORTHO05D006577 5.1e-146 521.5 346 74.3
FAN23G2634 Fragaria x ananassa HOM05D002169 ORTHO05D006577 5.1e-146 521.5 346 74.3
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 5.1e-146 521.5 346 74.3
Gorai.001G199700 Gossypium raimondii HOM05D002169 ORTHO05D006577 5.1e-146 521.5 347 75.5
BraA09t36782Z Brassica rapa HOM05D002169 ORTHO05D006577 1.1e-145 520.4 344 73.5
FAN26G1091 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.1e-145 520.4 346 74.0
A09p11420 Brassica napus HOM05D002169 ORTHO05D006577 1.5e-145 520.0 344 73.5
BolC9t54234H Brassica oleracea HOM05D002169 ORTHO05D006577 2.5e-145 519.2 344 75.0
Gohir.D07G178500 Gossypium hirsutum HOM05D002169 ORTHO05D006577 2.5e-145 519.2 347 75.2
PSO541G0991 Papaver somniferum HOM05D002169 ORTHO05D006577 3.3e-145 518.8 346 74.0
AL3G50440 Arabidopsis lyrata HOM05D002169 ORTHO05D006577 4.3e-145 518.5 344 73.8
Os03g0129200 Oryza sativa ssp. japonica HOM05D002169 ORTHO05D006577 4.3e-145 518.5 345 75.1
BcaC04g22967 Brassica carinata HOM05D002169 ORTHO05D006577 5.6e-145 518.1 344 75.0
BcaB07g31725 Brassica carinata HOM05D002169 ORTHO05D006577 1.3e-144 516.9 344 73.5
C09p13440 Brassica napus HOM05D002169 ORTHO05D006577 1.6e-144 516.5 344 74.7
Sp3g30870 Schrenkiella parvula HOM05D002169 ORTHO05D006577 1.6e-144 516.5 345 73.3
Carub.0003s3157 Capsella rubella HOM05D002169 ORTHO05D006577 2.1e-144 516.2 344 73.3
PSO675G7681 Papaver somniferum HOM05D002169 ORTHO05D006577 9.0e-143 510.8 346 72.8
Aa31LG8G14800 Aethionema arabicum HOM05D002169 ORTHO05D006577 2.6e-142 509.2 345 71.9
AT2G17510 Arabidopsis thaliana HOM05D002169 ORTHO05D006577 4.5e-142 508.4 373 68.6
EL10Ac6g15040 Beta vulgaris HOM05D002169 ORTHO05D006577 7.6e-142 507.7 344 75.3
Cfa013486 Carpinus fangiana HOM05D002169 ORTHO05D006577 6.4e-141 504.6 345 75.7
TWI73G1258 Tripterygium wilfordii HOM05D002169 ORTHO05D006577 1.4e-140 503.4 343 71.7
Zm00001eb002260 Zea mays HOM05D002169 ORTHO05D006577 1.9e-140 503.1 346 73.1
Sabra07G0050400 Salix brachista HOM05D002169 ORTHO05D006577 1.2e-139 500.4 394 66.0
CDE06G1921 Ceratophyllum demersum HOM05D002169 ORTHO05D006577 1.8e-135 486.5 344 71.2
Haze_03631 Corylus avellana HOM05D002169 ORTHO05D006577 4.0e-135 485.3 344 72.7
SHI29554 Sapria himalayana HOM05D002169 ORTHO05D006577 2.9e-133 479.2 344 68.3
HPP92_021382 Vanilla planifolia HOM05D002169 ORTHO05D006577 9.3e-132 474.2 345 69.9
Peaxi162Scf00040g03136 Petunia axillaris HOM05D002169 ORTHO05D006577 7.4e-129 464.5 334 70.7
unitig_747.g21786 Utricularia gibba HOM05D002169 ORTHO05D006577 4.8e-128 461.8 343 67.6
Pp3c16_17530 Physcomitrium patens HOM05D002169 ORTHO05D006577 5.5e-124 448.4 344 64.0
SMO228G0179 Selaginella moellendorffii HOM05D002169 ORTHO05D006577 6.1e-123 444.9 349 62.5
Mapoly0081s0047 Marchantia polymorpha HOM05D002169 ORTHO05D006577 1.4e-114 417.2 346 62.1
BcaB03g16519 Brassica carinata HOM05D002169 ORTHO05D006577 1.4e-108 397.1 274 72.3
CBR_g8384 Chara braunii HOM05D002169 ORTHO05D006577 1.7e-85 320.5 344 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1045 Anthoceros agrestis HOM05D002169 ORTHO05D006577 2.8e-83 313.2 351 49.0
CsaV3_3G005680 Cucumis sativus L. HOM05D002169 ORTHO05D006577 2.8e-83 313.2 223 71.3
VMungo1215G1369 Vigna mungo HOM05D002169 ORTHO05D006577 2.8e-75 286.6 155 90.3
TAR628G1413 Trochodendron aralioides HOM05D002169 ORTHO05D006577 4.4e-73 279.3 250 62.4
MCO02G146 Micromonas commoda HOM05D002169 ORTHO05D006577 7.0e-71 271.9 361 42.7
PRCOL_00000788 Prasinoderma coloniale HOM05D002169 ORTHO05D006577 2.3e-66 256.9 384 37.8
Cfa024479 Carpinus fangiana HOM05D002169 ORTHO05D006577 1.4e-50 204.5 360 33.1
Cre14.g613850 Chlamydomonas reinhardtii HOM05D002169 ORTHO05D006577 3.1e-50 203.4 340 36.2
MELO3C032185.2 Cucumis melo HOM05D002169 ORTHO05D006577 3.1e-50 203.4 187 60.4
C07p60960 Brassica napus HOM05D002169 ORTHO05D040931 4.9e-40 169.5 336 36.9
BolC7t46522H Brassica oleracea HOM05D002169 ORTHO05D040931 3.2e-39 166.8 334 36.8
BcaNung02375 Brassica carinata HOM05D002169 ORTHO05D006577 1.6e-38 164.5 347 36.0
Psat0s2855g0160 Pisum sativum HOM05D002169 ORTHO05D006577 2.2e-32 144.1 268 38.1
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 9.3e-31 138.7 294 35.4
FvH4_2g01010 Fragaria vesca HOM05D039334 ORTHO05D046119 3.0e-29 133.7 219 37.4
Nitab4.5_0006028g0010 Nicotiana tabacum HOM05D002169 ORTHO05D006577 3.9e-29 133.3 85 72.9
FAN24G1469 Fragaria x ananassa HOM05D039334 ORTHO05D046119 1.6e-27 127.9 201 39.8
Mapoly0140s0030 Marchantia polymorpha HOM05D002169 ORTHO05D006577 2.6e-25 120.6 397 26.4
Psat0ss777g0240 Pisum sativum HOM05D001137 ORTHO05D001967 2.7e-22 110.5 60 85.0
AagrBONN_evm.TU.Sc2ySwM_344.2182 Anthoceros agrestis HOM05D002169 ORTHO05D006577 1.0e-21 108.6 268 30.6
SMO228G0002 Selaginella moellendorffii HOM05D002169 ORTHO05D006577 1.5e-20 104.8 317 27.8
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 3.1e-18 97.1 263 31.2
CBR_g18659 Chara braunii HOM05D002169 ORTHO05D000353 6.1e-14 82.8 117 39.3
TAR628G0475 Trochodendron aralioides HOM05D002169 ORTHO05D006577 1.0e-13 82.0 46 87.0
Cre12.g507250 Chlamydomonas reinhardtii HOM05D002169 ORTHO05D006577 9.7e-12 75.5 325 26.8
HanXRQChr08g0229271 Helianthus annuus HOM05D002169 ORTHO05D006927 2.6e-09 67.4 262 23.7
FAN15G2589 Fragaria x ananassa HOM05D039334 ORTHO05D199408 1.3e-08 65.1 49 59.2
SMO230G0006 Selaginella moellendorffii HOM05D002169 ORTHO05D006927 8.5e-08 62.4 270 21.5
SEGI_05068 Sequoiadendron giganteum HOM05D002169 ORTHO05D006577 2.5e-07 60.8 54 44.4
TAR625G1072 Trochodendron aralioides HOM05D002169 ORTHO05D006927 7.2e-07 59.3 257 21.4
Actinidia25671 Actinidia chinensis HOM05D002169 ORTHO05D006577 1.2e-06 58.5 75 53.3


User provided reference genes

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