Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 1.0e-46 190.3 143 100.0
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 7.5e-21 104.4 109 73.4
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 6.6e-17 91.3 67 67.2
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 8.6e-17 90.9 62 80.6
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.6e-15 86.7 116 55.2
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 8.1e-15 84.3 68 64.7
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 2.3e-14 82.8 67 68.7
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 9.9e-13 77.4 105 51.4
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 2.2e-12 76.3 60 65.0
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.2e-12 76.3 105 50.5
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 2.9e-12 75.9 105 50.5
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 3.7e-12 75.5 57 64.9
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 4.9e-12 75.1 68 63.2
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 4.9e-12 75.1 71 62.0
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 1.1e-11 73.9 70 55.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.1e-11 73.9 68 54.4
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 1.1e-11 73.9 55 65.5
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.4e-11 73.6 68 58.8
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.9e-11 73.2 61 62.3
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.9e-11 73.2 61 62.3
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 4.1e-11 72.0 56 64.3
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 4.1e-11 72.0 57 61.4
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 5.4e-11 71.6 57 66.7
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 5.4e-11 71.6 57 66.7
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 7.1e-11 71.2 109 49.5
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 9.2e-11 70.9 70 51.4
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 9.2e-11 70.9 70 55.7
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.2e-10 70.5 62 58.1
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 1.2e-10 70.5 70 51.4
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.6e-10 70.1 67 55.2
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 1.6e-10 70.1 65 55.4
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.6e-10 70.1 54 64.8
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 2.1e-10 69.7 62 58.1
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.1e-10 69.7 68 54.4
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 2.1e-10 69.7 108 45.4
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 2.1e-10 69.7 70 52.9
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 2.7e-10 69.3 68 55.9
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 3.5e-10 68.9 110 40.9
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 3.5e-10 68.9 68 54.4
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.6e-10 68.6 112 46.4
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 6.0e-10 68.2 112 50.0
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 1.0e-09 67.4 70 50.0
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 1.0e-09 67.4 68 52.9
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 1.0e-09 67.4 68 52.9
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.0e-09 67.4 59 62.7
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.3e-09 67.0 58 58.6
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 1.3e-09 67.0 68 48.5
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 1.3e-09 67.0 57 57.9
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.7e-09 66.6 68 52.9
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 3.0e-09 65.9 58 56.9
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 3.0e-09 65.9 50 64.0
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 3.9e-09 65.5 60 55.0
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 3.9e-09 65.5 50 62.0
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.9e-09 65.5 51 60.8
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.9e-09 65.5 51 60.8
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 5.1e-09 65.1 65 55.4
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 8.6e-09 64.3 68 52.9
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 8.6e-09 64.3 57 54.4
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 8.6e-09 64.3 56 57.1
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 8.6e-09 64.3 59 59.3
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 1.1e-08 63.9 70 48.6
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 1.5e-08 63.5 62 51.6
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 1.5e-08 63.5 57 50.9
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 1.9e-08 63.2 65 53.8
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 1.9e-08 63.2 65 53.8
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 1.9e-08 63.2 65 53.8
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 1.9e-08 63.2 65 53.8
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.9e-08 63.2 57 61.4
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.9e-08 63.2 57 61.4
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.9e-08 63.2 70 47.1
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 1.9e-08 63.2 65 52.3
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 1.9e-08 63.2 56 55.4
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 2.5e-08 62.8 66 51.5
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.5e-08 62.8 57 54.4
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 2.5e-08 62.8 57 54.4
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 2.5e-08 62.8 51 60.8
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 2.5e-08 62.8 59 59.3
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 2.5e-08 62.8 70 51.4
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.5e-08 62.8 62 56.5
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 2.5e-08 62.8 50 60.0
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 3.3e-08 62.4 67 52.2
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 3.3e-08 62.4 109 45.9
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 3.3e-08 62.4 65 50.8
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 4.3e-08 62.0 114 54.4
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 4.3e-08 62.0 51 60.8
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 4.3e-08 62.0 57 52.6
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 4.3e-08 62.0 57 56.1
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 4.3e-08 62.0 63 49.2
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 5.6e-08 61.6 70 50.0
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 5.6e-08 61.6 108 47.2
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 7.3e-08 61.2 62 54.8
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 7.3e-08 61.2 65 46.2
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 7.3e-08 61.2 54 55.6
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 7.3e-08 61.2 70 48.6
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 7.3e-08 61.2 58 51.7
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 7.3e-08 61.2 58 51.7
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 9.5e-08 60.8 108 39.8
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 1.2e-07 60.5 115 42.6
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.6e-07 60.1 62 53.2
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 2.8e-07 59.3 70 47.1
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 3.6e-07 58.9 46 60.9
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 3.6e-07 58.9 47 59.6
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 3.6e-07 58.9 51 62.7
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 4.7e-07 58.5 62 50.0
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 4.7e-07 58.5 54 57.4
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 4.7e-07 58.5 70 42.9
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 6.2e-07 58.2 58 50.0
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 8.1e-07 57.8 49 57.1
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 1.1e-06 57.4 61 49.2
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 1.1e-06 57.4 61 49.2
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 1.4e-06 57.0 63 52.4
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 1.4e-06 57.0 44 61.4
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 1.4e-06 57.0 65 44.6
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.8e-06 56.6 59 49.2
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 1.8e-06 56.6 56 51.8
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 1.8e-06 56.6 60 43.3
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 2.4e-06 56.2 53 52.8
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 3.1e-06 55.8 62 46.8
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 3.1e-06 55.8 61 50.8
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 3.1e-06 55.8 52 51.9
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 4.0e-06 55.5 65 43.1
Lj2g0024305 Lotus japonicus HOM05D004188 ORTHO05D004445 4.0e-06 55.5 50 54.0
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 4.0e-06 55.5 40 65.0
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 6.8e-06 54.7 61 42.6
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 6.8e-06 54.7 43 62.8


User provided reference genes

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