Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 0.0e+00 1354.0 704 100.0
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 0.0e+00 1234.2 712 91.4
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 0.0e+00 1193.3 708 89.1
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 0.0e+00 1172.9 710 87.9
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 0.0e+00 1110.9 707 80.8
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 2.8e-310 1068.1 706 80.5
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 9.0e-309 1063.1 709 82.1
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 3.1e-301 1038.1 706 78.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 1.2e-300 1036.2 707 79.8
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 2.9e-299 1031.6 741 77.5
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 1.6e-297 1025.8 707 78.8
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 1.5e-295 1019.2 706 78.2
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 4.5e-268 927.9 710 71.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 6.7e-256 887.5 716 69.0
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 3.7e-246 855.1 715 66.0
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 1.0e-243 847.0 716 67.0
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 6.5e-243 844.3 714 67.6
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 4.0e-240 835.1 719 65.9
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 2.7e-236 822.4 702 66.1
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 7.8e-236 820.8 711 64.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 2.3e-235 819.3 710 66.9
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 3.8e-235 818.5 733 62.3
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 1.5e-234 816.6 713 64.1
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 2.8e-233 812.4 711 64.6
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.4e-232 810.1 708 65.5
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 2.3e-232 809.3 713 63.0
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 7.5e-231 804.3 704 66.2
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.3e-230 803.5 733 61.7
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 2.9e-230 802.4 711 65.0
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 6.4e-230 801.2 710 64.8
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 1.4e-229 800.0 720 64.7
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 7.0e-229 797.7 714 64.1
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.3e-227 793.5 722 64.5
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.5e-226 790.0 706 64.6
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 2.5e-226 789.3 728 61.7
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 1.3e-222 776.9 724 63.7
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 1.0e-219 767.3 733 60.7
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 6.2e-217 758.1 709 61.8
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 1.7e-211 740.0 743 57.7
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.9e-211 738.8 709 62.9
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 8.6e-211 737.6 720 62.4
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 3.3e-210 735.7 710 60.6
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 7.3e-210 734.6 710 60.4
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 9.5e-210 734.2 716 63.8
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 1.2e-209 733.8 706 58.6
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 3.1e-208 729.2 711 59.5
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 8.9e-208 727.6 729 59.5
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.5e-207 726.9 675 62.7
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 2.6e-207 726.1 715 59.7
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 5.8e-207 724.9 712 59.3
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 5.8e-207 724.9 711 59.8
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 9.9e-207 724.2 724 60.4
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 2.9e-206 722.6 713 59.5
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 2.4e-205 719.5 716 59.4
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 3.2e-205 719.2 711 59.5
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 1.3e-203 713.8 709 59.1
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 3.0e-203 712.6 729 60.2
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 2.5e-202 709.5 712 58.6
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 2.0e-199 699.9 706 60.3
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 4.4e-199 698.7 561 65.4
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 5.8e-199 698.4 716 58.4
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.2e-198 696.4 710 57.7
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 8.4e-198 694.5 708 56.4
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 1.1e-194 684.1 715 55.9
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 2.5e-194 682.9 716 55.7
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.5e-194 682.9 713 57.4
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 4.3e-194 682.2 717 57.0
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 7.3e-194 681.4 711 55.1
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 9.6e-194 681.0 708 57.2
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 1.6e-193 680.2 709 56.1
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 8.1e-193 677.9 719 58.1
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 8.1e-193 677.9 645 60.6
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.1e-192 677.6 586 63.5
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 6.9e-192 674.9 705 58.6
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 9.0e-192 674.5 715 56.9
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 3.4e-191 672.5 712 55.6
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 4.5e-191 672.2 732 55.9
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 5.8e-191 671.8 721 56.2
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 4.9e-190 668.7 715 55.0
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 1.3e-187 660.6 727 56.3
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 6.2e-185 651.7 711 56.5
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 1.1e-184 651.0 709 55.4
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.4e-184 650.6 711 56.3
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.4e-184 650.6 719 54.8
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 4.0e-184 649.0 607 61.0
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 2.0e-183 646.7 688 56.5
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 7.6e-183 644.8 605 60.8
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 2.9e-182 642.9 713 55.4
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 3.8e-182 642.5 713 55.4
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 1.1e-181 641.0 704 56.0
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 1.9e-181 640.2 712 55.1
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 1.2e-180 637.5 713 55.4
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 3.5e-180 636.0 549 64.1
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 1.8e-179 633.6 718 53.8
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.9e-178 630.2 707 55.3
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.1e-177 626.7 763 53.2
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 1.5e-175 620.5 546 63.4
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.0e-171 607.8 724 53.2
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.8e-169 599.7 549 62.1
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.1e-165 587.8 719 53.3
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.2e-164 584.3 732 51.8
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 8.2e-161 571.6 577 58.8
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.8e-160 570.5 656 55.6
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 9.1e-144 515.0 569 53.1
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 6.1e-140 502.3 704 46.3
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 2.3e-139 500.4 574 53.1
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 2.6e-138 496.9 625 50.7
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 3.7e-137 493.0 447 64.2
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 9.1e-136 488.4 500 56.8
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 6.5e-134 482.3 683 46.3
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 2.6e-114 417.2 359 65.5
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 5.8e-114 416.0 333 67.9
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 8.3e-113 412.1 331 66.5
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 3.2e-112 410.2 359 68.2
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 1.2e-106 391.7 324 65.1
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 9.8e-106 388.7 572 43.7
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.2e-105 387.5 359 61.8
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 7.1e-104 382.5 400 57.2
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 2.4e-88 330.9 810 34.0
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 6.6e-86 322.8 929 31.1
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 6.2e-76 289.7 375 49.3
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 6.2e-76 289.7 372 48.7
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 3.5e-71 273.9 352 56.8
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 6.2e-68 263.1 142 93.7
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 5.5e-64 250.0 220 62.3
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 3.9e-62 243.8 344 55.5
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 5.3e-51 206.8 301 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.2e-50 205.7 224 56.7
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 3.6e-47 194.1 136 76.5
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.1e-43 182.6 289 41.2
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 2.5e-40 171.4 128 71.1
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 5.1e-38 163.7 215 48.8
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.5e-37 162.2 198 46.0
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 3.0e-30 137.9 278 37.1
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 6.3e-28 130.2 132 53.0
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 1.4e-19 102.4 792 24.2
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.8e-14 85.5 77 62.3
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 1.5e-13 82.4 158 44.3
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 5.7e-13 80.5 86 55.8
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.0e-09 69.7 98 38.8
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.5e-08 65.9 102 41.2
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 1.5e-08 65.9 61 47.5
Lj5P134T60 Lonicera japonica HOM05D000874 ORTHO05D001267 6.1e-07 60.5 69 40.6
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 1.4e-06 59.3 101 36.6
Gohir.D11G238400 Gossypium hirsutum HOM05D001562 ORTHO05D001437 5.2e-06 57.4 140 30.7
TAR371G0581 Trochodendron aralioides HOM05D000874 ORTHO05D003941 5.2e-06 57.4 69 39.1
AUR62039650 Chenopodium quinoa HOM05D000874 ORTHO05D001267 6.8e-06 57.0 69 37.7
Glyma.19G121100 Glycine max HOM05D001562 ORTHO05D001437 6.8e-06 57.0 153 29.4
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 6.8e-06 57.0 53 50.9
Lalb_Chr14g0365071 Lupinus albus HOM05D001562 ORTHO05D001437 8.9e-06 56.6 168 29.2
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 8.9e-06 56.6 87 42.5


User provided reference genes

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