Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G109202 Glycine max HOM05D000887 ORTHO05D026544 8.2e-45 183.3 92 100.0
Glyma.13G210800 Glycine max HOM05D000887 ORTHO05D000908 2.7e-40 168.3 88 96.6
Glyma.15G102000 Glycine max HOM05D000887 ORTHO05D000908 6.7e-39 163.7 88 93.2
Lj6g0011884 Lotus japonicus HOM05D000887 ORTHO05D000908 1.5e-33 146.0 88 83.0
Phvul.006G155800 Phaseolus vulgaris HOM05D000887 ORTHO05D000908 2.7e-32 141.7 88 84.1
arahy.Tifrunner.gnm1.ann1.A863J5 Arachis hypogaea HOM05D000887 ORTHO05D000908 4.7e-32 141.0 88 79.5
arahy.Tifrunner.gnm1.ann1.S2QYAG Arachis hypogaea HOM05D000887 ORTHO05D000908 4.7e-32 141.0 88 79.5
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 6.1e-32 140.6 88 83.0
Lalb_Chr20g0118321 Lupinus albus HOM05D000887 ORTHO05D000908 6.1e-32 140.6 88 78.4
Lalb_Chr15g0087281 Lupinus albus HOM05D000887 ORTHO05D000908 2.3e-31 138.7 88 77.3
Haze_00993 Corylus avellana HOM05D000887 ORTHO05D000908 4.0e-31 137.9 88 77.3
CAN.G522.8 Capsicum annuum HOM05D000887 ORTHO05D000908 9.7e-30 133.3 88 70.5
Cfa015555 Carpinus fangiana HOM05D000887 ORTHO05D000908 1.3e-29 132.9 88 73.9
CANSAT78G0675 Cannabis sativa HOM05D000887 ORTHO05D000908 1.7e-29 132.5 89 74.2
CiPaw.02G090300 Carya illinoinensis HOM05D000887 ORTHO05D000908 1.7e-29 132.5 88 75.0
TAR362G1153 Trochodendron aralioides HOM05D000887 ORTHO05D000908 1.7e-29 132.5 88 76.1
Dinv44467 Davidia involucrata HOM05D000887 ORTHO05D000908 2.2e-29 132.1 88 72.7
TWI09G1354 Tripterygium wilfordii HOM05D000887 ORTHO05D000908 2.2e-29 132.1 88 75.0
QL06p005909 Quercus lobata HOM05D000887 ORTHO05D000908 2.8e-29 131.7 88 72.7
PGSC0003DMG400004355 Solanum tuberosum HOM05D000887 ORTHO05D000908 2.8e-29 131.7 88 69.3
Psat1g185960 Pisum sativum HOM05D000887 ORTHO05D000908 3.7e-29 131.3 88 76.1
Sopen01g032070 Solanum pennellii HOM05D000887 ORTHO05D000908 3.7e-29 131.3 88 69.3
Solyc01g080280.3 Solanum lycopersicum HOM05D000887 ORTHO05D000908 4.8e-29 131.0 88 70.5
Prupe.1G148700 Prunus persica HOM05D000887 ORTHO05D000908 6.3e-29 130.6 88 72.7
Rhsim04G0209400 Rhododendron simsii HOM05D000887 ORTHO05D000908 8.2e-29 130.2 88 72.7
Nitab4.5_0000059g0010 Nicotiana tabacum HOM05D000887 ORTHO05D000908 1.8e-28 129.0 88 68.2
Nitab4.5_0003070g0010 Nicotiana tabacum HOM05D000887 ORTHO05D000908 1.8e-28 129.0 88 68.2
SalBow2G1278 Salvia bowleyana HOM05D000887 ORTHO05D000908 2.4e-28 128.6 88 70.5
Ciclev10005007m.g Citrus clementina HOM05D000887 ORTHO05D000908 3.1e-28 128.3 88 73.9
CSS0007310 Camellia sinensis var. sinensis HOM05D000887 ORTHO05D000908 4.1e-28 127.9 88 68.2
CiPaw.01G157900 Carya illinoinensis HOM05D000887 ORTHO05D000908 4.1e-28 127.9 88 69.3
Potri.010G029100 Populus trichocarpa HOM05D000887 ORTHO05D000908 4.1e-28 127.9 88 71.6
ClCG05G005520 Citrullus lanatus HOM05D000887 ORTHO05D000908 5.3e-28 127.5 88 68.2
Migut.N00140 Erythranthe guttata HOM05D000887 ORTHO05D000908 1.2e-27 126.3 88 69.3
Hma1.2p1_0511F.1_g169160 Hydrangea macrophylla HOM05D000887 ORTHO05D000908 1.2e-27 126.3 88 70.5
Peaxi162Scf00095g00720 Petunia axillaris HOM05D000887 ORTHO05D000908 1.6e-27 125.9 88 64.8
Oeu023653.1 Olea europaea HOM05D000887 ORTHO05D000908 2.0e-27 125.6 88 68.2
Cpa.g.sc16.50 Carica papaya HOM05D000887 ORTHO05D000908 2.7e-27 125.2 88 68.2
Manes.03G186600 Manihot esculenta HOM05D000887 ORTHO05D000908 2.7e-27 125.2 88 70.5
Potri.008G200100 Populus trichocarpa HOM05D000887 ORTHO05D000908 3.5e-27 124.8 88 68.2
Sed0000546 Sechium edule HOM05D000887 ORTHO05D000908 3.5e-27 124.8 90 71.1
SGA_v2.0_scaffold142G35622 Striga asiatica HOM05D000887 ORTHO05D000908 3.5e-27 124.8 88 69.3
Atru.chr4.2669 Acer truncatum HOM05D000887 ORTHO05D000908 4.5e-27 124.4 88 69.3
Gohir.A09G200500 Gossypium hirsutum HOM05D000887 ORTHO05D000908 7.7e-27 123.6 88 69.3
Sabra08G0160800 Salix brachista HOM05D000887 ORTHO05D000908 7.7e-27 123.6 88 67.0
Sed0005712 Sechium edule HOM05D000887 ORTHO05D000908 1.0e-26 123.2 88 71.6
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.0e-26 123.2 89 73.0
TWI53G1731 Tripterygium wilfordii HOM05D000887 ORTHO05D000908 1.0e-26 123.2 88 68.2
Thecc.04G219100 Theobroma cacao HOM05D000887 ORTHO05D000908 1.7e-26 122.5 88 67.0
Gohir.D09G194700 Gossypium hirsutum HOM05D000887 ORTHO05D000908 3.8e-26 121.3 88 67.0
MELO3C006577.2 Cucumis melo HOM05D000887 ORTHO05D000908 5.0e-26 120.9 88 65.9
Cc03_g02940 Coffea canephora HOM05D000887 ORTHO05D000908 8.5e-26 120.2 88 62.5
Duzib151G1072 Durio zibethinus HOM05D000887 ORTHO05D000908 8.5e-26 120.2 88 65.9
Gorai.006G218100 Gossypium raimondii HOM05D000887 ORTHO05D000908 8.5e-26 120.2 88 67.0
CsaV3_3G013840 Cucumis sativus L. HOM05D000887 ORTHO05D000908 1.1e-25 119.8 88 63.6
Lj6A664T61 Lonicera japonica HOM05D000887 ORTHO05D000908 1.5e-25 119.4 89 66.3
Oeu037666.3 Olea europaea HOM05D000887 ORTHO05D000908 2.5e-25 118.6 88 64.8
GSVIVG01017868001 Vitis vinifera HOM05D000887 ORTHO05D000908 2.5e-25 118.6 88 64.8
Gohir.A02G025100 Gossypium hirsutum HOM05D000887 ORTHO05D000908 5.5e-25 117.5 88 64.8
Gohir.D02G032300 Gossypium hirsutum HOM05D000887 ORTHO05D000908 7.2e-25 117.1 88 63.6
Gorai.005G035800 Gossypium raimondii HOM05D000887 ORTHO05D000908 7.2e-25 117.1 88 63.6
RcHm_v2.0_Chr4g0419011 Rosa chinensis HOM05D000887 ORTHO05D000908 9.4e-25 116.7 88 67.0
Eucgr.L02175 Eucalyptus grandis HOM05D000887 ORTHO05D000908 1.2e-24 116.3 85 68.2
FvH4_4g14190 Fragaria vesca HOM05D000887 ORTHO05D000908 1.2e-24 116.3 88 68.2
FAN12G3143 Fragaria x ananassa HOM05D000887 ORTHO05D000908 1.2e-24 116.3 88 68.2
Eucgr.B01163 Eucalyptus grandis HOM05D000887 ORTHO05D000908 1.6e-24 115.9 88 65.9
Medtr2g021255 Medicago truncatula HOM05D000887 ORTHO05D000908 1.6e-24 115.9 88 72.7
Nn1g02130 Nelumbo nucifera HOM05D000887 ORTHO05D000908 1.6e-24 115.9 88 63.6
FAN07G0663 Fragaria x ananassa HOM05D000887 ORTHO05D000908 3.6e-24 114.8 88 67.0
FAN17G1330 Fragaria x ananassa HOM05D000887 ORTHO05D000908 3.6e-24 114.8 88 67.0
FAN22G1918 Fragaria x ananassa HOM05D000887 ORTHO05D000908 3.6e-24 114.8 88 67.0
PGR031G3907 Punica granatum HOM05D000887 ORTHO05D000908 3.6e-24 114.8 88 63.6
Aqoxy5G00544 Aquilegia oxysepala HOM05D000887 ORTHO05D000908 4.7e-24 114.4 88 62.5
Medtr2g021242 Medicago truncatula HOM05D000887 ORTHO05D000908 8.0e-24 113.6 88 71.6
SalBow5G2651 Salvia bowleyana HOM05D000887 ORTHO05D000908 1.8e-23 112.5 89 66.3
SalBow5G5516 Salvia bowleyana HOM05D000887 ORTHO05D000908 1.8e-23 112.5 89 66.3
DCAR_027142 Daucus carota HOM05D000887 ORTHO05D000908 4.0e-23 111.3 82 65.9
COL.COLO4_21622 Corchorus olitorius HOM05D000887 ORTHO05D000908 6.8e-23 110.5 88 64.8
MD16G1181300 Malus domestica HOM05D000887 ORTHO05D000908 8.8e-23 110.2 76 71.1
PSO832G0313 Papaver somniferum HOM05D000887 ORTHO05D000908 1.5e-22 109.4 89 60.7
PSO210G3805 Papaver somniferum HOM05D000887 ORTHO05D000908 2.6e-22 108.6 89 60.7
MD13G1180400 Malus domestica HOM05D000887 ORTHO05D000908 7.5e-22 107.1 76 68.4
Lsat_1_v5_gn_5_77601 Lactuca sativa HOM05D000887 ORTHO05D000908 3.7e-21 104.8 88 59.1
GSVIVG01011072001 Vitis vinifera HOM05D000887 ORTHO05D000908 4.8e-21 104.4 89 61.8
Ah.13g071730 Amaranthus hybridus HOM05D000887 ORTHO05D000908 1.1e-20 103.2 89 62.9
ECA234G3223 Erigeron canadensis HOM05D000887 ORTHO05D000908 2.4e-20 102.1 88 58.0
Lsat_1_v5_gn_6_5901 Lactuca sativa HOM05D000887 ORTHO05D026544 4.1e-20 101.3 85 58.8
MBI17_g29607_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D000908 5.4e-20 100.9 90 62.2
Sc13g0003840 Simmondsia chinensis HOM05D000887 ORTHO05D000908 7.0e-20 100.5 88 59.1
THA.LOC104826605 Tarenaya hassleriana HOM05D000887 ORTHO05D000908 1.6e-19 99.4 90 60.0
THA.LOC104815345 Tarenaya hassleriana HOM05D000887 ORTHO05D000908 2.7e-19 98.6 90 61.1
Aa31sc348G10 Aethionema arabicum HOM05D000887 ORTHO05D000908 5.9e-19 97.4 90 58.9
arahy.Tifrunner.gnm1.ann1.G39DTN Arachis hypogaea HOM05D000887 ORTHO05D026544 1.0e-18 96.7 60 76.7
EL10Ac3g06522 Beta vulgaris HOM05D000887 ORTHO05D000908 2.2e-18 95.5 89 57.3
HanXRQChr12g0359481 Helianthus annuus HOM05D000887 ORTHO05D000908 3.8e-18 94.7 88 54.5
C04p43320 Brassica napus HOM05D000887 ORTHO05D000908 1.1e-17 93.2 88 56.8
BolC4t25912H Brassica oleracea HOM05D000887 ORTHO05D000908 1.1e-17 93.2 88 56.8
AUR62041208 Chenopodium quinoa HOM05D000887 ORTHO05D000908 1.1e-17 93.2 89 57.3
Thhalv10004280m.g Eutrema salsugineum HOM05D000887 ORTHO05D000908 2.5e-17 92.0 88 58.0
BcaC02g09485 Brassica carinata HOM05D000887 ORTHO05D000908 3.2e-17 91.7 88 55.7
ATR0626G264 Amborella trichopoda HOM05D000887 ORTHO05D000908 4.2e-17 91.3 92 55.4
A08p09830 Brassica napus HOM05D000887 ORTHO05D000908 4.2e-17 91.3 88 56.8
BraA08t32977Z Brassica rapa HOM05D000887 ORTHO05D000908 4.2e-17 91.3 88 56.8
HanXRQChr10g0310191 Helianthus annuus HOM05D000887 ORTHO05D000908 4.2e-17 91.3 76 60.5
BcaB06g26952 Brassica carinata HOM05D000887 ORTHO05D000908 7.2e-17 90.5 88 58.0
A04p09810 Brassica napus HOM05D000887 ORTHO05D000908 9.5e-17 90.1 88 58.0
BraA04t16642Z Brassica rapa HOM05D000887 ORTHO05D000908 9.5e-17 90.1 88 58.0
BcaC07g37653 Brassica carinata HOM05D000887 ORTHO05D000908 1.2e-16 89.7 88 55.7
BolC8t48027H Brassica oleracea HOM05D000887 ORTHO05D000908 1.2e-16 89.7 88 55.7
BcaB04g18023 Brassica carinata HOM05D000887 ORTHO05D000908 6.1e-16 87.4 88 55.7
AL7G44490 Arabidopsis lyrata HOM05D000887 ORTHO05D000908 8.0e-16 87.0 88 56.8
Carub.0007s3137 Capsella rubella HOM05D000887 ORTHO05D000908 1.4e-15 86.3 89 57.3
AT5G35630 Arabidopsis thaliana HOM05D000887 ORTHO05D000908 1.8e-15 85.9 88 55.7
Sp7g06630 Schrenkiella parvula HOM05D000887 ORTHO05D000908 2.3e-15 85.5 88 55.7
CARHR217810 Cardamine hirsuta HOM05D000887 ORTHO05D000908 5.2e-15 84.3 88 52.3
unitig_748.g8356 Utricularia gibba HOM05D000887 ORTHO05D000908 2.2e-13 79.0 60 63.3
CDE02G0193 Ceratophyllum demersum HOM05D000887 ORTHO05D000908 1.2e-11 73.2 84 48.8
ATR0626G359 Amborella trichopoda HOM05D000887 ORTHO05D026544 2.1e-08 62.4 63 52.4
Os04g0659100 Oryza sativa ssp. japonica HOM05D000887 ORTHO05D000908 3.6e-08 61.6 89 40.4


User provided reference genes

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