Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 2.9e-37 159.1 160 100.0
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 1.9e-28 129.8 165 78.2
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 7.1e-20 101.3 74 79.7
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.3e-18 97.1 74 75.7
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 3.9e-18 95.5 93 73.1
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-16 90.5 69 72.5
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 1.3e-16 90.5 69 72.5
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 3.7e-16 89.0 73 72.6
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 6.2e-16 88.2 74 70.3
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 8.2e-16 87.8 67 73.1
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 3.1e-15 85.9 69 68.1
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 5.3e-15 85.1 75 65.3
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 5.3e-15 85.1 75 65.3
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.2e-14 84.0 70 64.3
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 2.0e-14 83.2 68 66.2
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 1.3e-13 80.5 67 62.7
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.8e-13 79.0 60 70.0
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.9e-13 78.6 63 65.1
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 8.4e-13 77.8 70 65.7
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 8.4e-13 77.8 74 59.5
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.9e-12 76.6 67 64.2
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.5e-12 76.3 59 66.1
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 3.2e-12 75.9 51 76.5
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 3.2e-12 75.9 76 59.2
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 4.2e-12 75.5 98 60.2
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 5.5e-12 75.1 72 59.7
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 5.5e-12 75.1 69 62.3
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 7.1e-12 74.7 56 71.4
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 7.1e-12 74.7 56 71.4
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 9.3e-12 74.3 57 64.9
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 9.3e-12 74.3 57 63.2
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.2e-11 73.9 74 58.1
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.6e-11 73.6 74 58.1
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.6e-11 73.6 56 69.6
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.1e-11 73.2 60 68.3
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 2.1e-11 73.2 69 59.4
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 2.7e-11 72.8 75 57.3
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.5e-11 72.4 51 74.5
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 4.6e-11 72.0 74 56.8
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 4.6e-11 72.0 66 59.1
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 7.9e-11 71.2 75 56.0
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 7.9e-11 71.2 69 56.5
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 1.3e-10 70.5 69 52.2
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.8e-10 70.1 57 66.7
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 2.3e-10 69.7 74 54.1
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 2.3e-10 69.7 69 59.4
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 3.9e-10 68.9 70 57.1
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 3.9e-10 68.9 64 62.5
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 5.1e-10 68.6 74 52.7
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 5.1e-10 68.6 76 55.3
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 6.7e-10 68.2 69 56.5
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 6.7e-10 68.2 69 56.5
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 6.7e-10 68.2 58 58.6
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 8.7e-10 67.8 76 55.3
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 8.7e-10 67.8 67 55.2
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 8.7e-10 67.8 68 54.4
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.1e-09 67.4 61 60.7
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.1e-09 67.4 60 60.0
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 1.1e-09 67.4 66 47.0
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.1e-09 67.4 63 61.9
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 1.1e-09 67.4 56 58.9
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 1.5e-09 67.0 72 54.2
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 1.9e-09 66.6 58 58.6
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 2.5e-09 66.2 63 58.7
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 2.5e-09 66.2 63 58.7
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 2.5e-09 66.2 63 58.7
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 2.5e-09 66.2 63 58.7
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 2.5e-09 66.2 63 58.7
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 2.5e-09 66.2 74 54.1
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.5e-09 66.2 67 56.7
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 2.5e-09 66.2 57 57.9
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 4.3e-09 65.5 69 55.1
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 5.7e-09 65.1 63 57.1
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.7e-09 65.1 62 64.5
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.7e-09 65.1 62 64.5
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 5.7e-09 65.1 61 57.4
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 7.4e-09 64.7 58 56.9
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 7.4e-09 64.7 76 52.6
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 7.4e-09 64.7 56 60.7
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 7.4e-09 64.7 52 67.3
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 7.4e-09 64.7 70 55.7
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 7.4e-09 64.7 46 65.2
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 9.7e-09 64.3 48 62.5
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 9.7e-09 64.3 69 49.3
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 1.3e-08 63.9 63 55.6
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 2.8e-08 62.8 68 54.4
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.8e-08 62.8 51 62.7
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 2.8e-08 62.8 56 57.1
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 3.7e-08 62.4 61 59.0
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 4.8e-08 62.0 68 52.9
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 4.8e-08 62.0 76 48.7
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 4.8e-08 62.0 56 51.8
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 4.8e-08 62.0 71 50.7
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 6.3e-08 61.6 68 52.9
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 6.3e-08 61.6 54 59.3
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 6.3e-08 61.6 70 51.4
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 6.3e-08 61.6 69 52.2
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 6.3e-08 61.6 74 50.0
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 6.3e-08 61.6 68 51.5
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 6.3e-08 61.6 68 51.5
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 8.2e-08 61.2 69 52.2
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 8.2e-08 61.2 61 54.1
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 1.1e-07 60.8 58 51.7
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 60 55.0
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 1.4e-07 60.5 57 54.4
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 1.4e-07 60.5 64 51.6
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 1.8e-07 60.1 58 51.7
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.8e-07 60.1 48 64.6
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 2.4e-07 59.7 59 50.8
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 2.4e-07 59.7 58 60.3
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 3.1e-07 59.3 65 52.3
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 3.1e-07 59.3 58 51.7
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 3.1e-07 59.3 58 50.0
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 4.1e-07 58.9 53 54.7
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 5.3e-07 58.5 61 54.1
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 5.3e-07 58.5 56 51.8
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 6.9e-07 58.2 50 54.0
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 9.0e-07 57.8 66 51.5
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 1.2e-06 57.4 64 48.4
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 1.2e-06 57.4 64 54.7
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 1.2e-06 57.4 48 62.5
BcaB06g28215 Brassica carinata HOM05D011190 ORTHO05D013686 2.6e-06 56.2 50 50.0
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 2.6e-06 56.2 61 50.8
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 2.6e-06 56.2 58 48.3
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 3.4e-06 55.8 40 67.5
AT2G28440 Arabidopsis thaliana HOM05D011190 ORTHO05D013686 4.5e-06 55.5 59 47.5
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 4.5e-06 55.5 61 54.1
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 4.5e-06 55.5 61 44.3
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 4.5e-06 55.5 61 50.8
BolC3t13742H Brassica oleracea HOM05D004188 ORTHO05D004445 4.5e-06 55.5 55 60.0
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 4.5e-06 55.5 68 45.6
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 4.5e-06 55.5 48 56.2
C03p12760 Brassica napus HOM05D004188 ORTHO05D004445 5.9e-06 55.1 55 60.0
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 7.7e-06 54.7 61 50.8
BraA07t29606Z Brassica rapa HOM05D011190 ORTHO05D013686 7.7e-06 54.7 61 45.9


User provided reference genes

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