Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G066150 Glycine max HOM05D007195 ORTHO05D008939 1.1e-40 169.5 85 100.0
Glyma.11G143000 Glycine max HOM05D007195 ORTHO05D008939 3.8e-20 101.3 70 80.0
Phvul.011G067100 Phaseolus vulgaris HOM05D007195 ORTHO05D008939 7.1e-19 97.1 70 74.3
VMungo1127G1709 Vigna mungo HOM05D007195 ORTHO05D008939 9.3e-19 96.7 70 72.9
Medtr4g060990 Medicago truncatula HOM05D007195 ORTHO05D008939 2.3e-17 92.0 68 73.5
Lalb_Chr19g0137671 Lupinus albus HOM05D007195 ORTHO05D008939 3.9e-17 91.3 67 73.1
Lj3g0003411 Lotus japonicus HOM05D007195 ORTHO05D008939 6.7e-17 90.5 67 73.1
TPR.G2998 Trifolium pratense HOM05D007195 ORTHO05D008939 6.7e-17 90.5 67 73.1
Psat6g139760 Pisum sativum HOM05D007195 ORTHO05D008939 1.1e-16 89.7 70 70.0
Psat7g222600 Pisum sativum HOM05D007195 ORTHO05D008939 1.1e-16 89.7 70 70.0
Ca_19192_v3 Cicer arietinum L. HOM05D007195 ORTHO05D008939 4.3e-16 87.8 68 69.1
Lalb_Chr01g0003811 Lupinus albus HOM05D007195 ORTHO05D008939 1.6e-15 85.9 67 67.2
Rhsim13G0087100 Rhododendron simsii HOM05D007195 ORTHO05D008939 2.4e-14 82.0 70 61.4
Actinidia37244 Actinidia chinensis HOM05D007195 ORTHO05D008939 5.3e-14 80.9 70 62.9
Dinv32847 Davidia involucrata HOM05D007195 ORTHO05D008939 1.2e-13 79.7 70 61.4
Gorai.003G136500 Gossypium raimondii HOM05D007195 ORTHO05D008939 1.2e-13 79.7 70 61.4
QL01p033425 Quercus lobata HOM05D007195 ORTHO05D008939 1.5e-13 79.3 70 60.0
Thecc.09G327900 Theobroma cacao HOM05D007195 ORTHO05D008939 1.5e-13 79.3 70 62.9
CSS0047106 Camellia sinensis var. sinensis HOM05D007195 ORTHO05D008939 2.0e-13 79.0 70 58.6
GSVIVG01025036001 Vitis vinifera HOM05D007195 ORTHO05D008939 2.0e-13 79.0 70 55.7
Nitab4.5_0003179g0020 Nicotiana tabacum HOM05D007195 ORTHO05D008939 2.6e-13 78.6 70 55.7
Hma1.2p1_0846F.1_g227610 Hydrangea macrophylla HOM05D007195 ORTHO05D008939 3.4e-13 78.2 70 58.6
Hma1.2p1_0846F.1_g227620 Hydrangea macrophylla HOM05D007195 ORTHO05D008939 3.4e-13 78.2 70 58.6
Cc01_g12270 Coffea canephora HOM05D007195 ORTHO05D008939 5.9e-13 77.4 70 62.9
Gohir.A03G038600 Gossypium hirsutum HOM05D007195 ORTHO05D008939 5.9e-13 77.4 70 60.0
Nn2g10480 Nelumbo nucifera HOM05D007195 ORTHO05D008939 5.9e-13 77.4 70 57.1
Oeu040291.1 Olea europaea HOM05D007195 ORTHO05D008939 1.0e-12 76.6 67 62.7
Gohir.D03G129800 Gossypium hirsutum HOM05D007195 ORTHO05D008939 1.3e-12 76.3 70 58.6
PSO384G1952 Papaver somniferum HOM05D007195 ORTHO05D008939 1.3e-12 76.3 70 54.3
MD03G1100000 Malus domestica HOM05D007195 ORTHO05D008939 1.7e-12 75.9 65 61.5
Sabra16G0141600 Salix brachista HOM05D007195 ORTHO05D008939 1.7e-12 75.9 70 60.0
PGSC0003DMG401015537 Solanum tuberosum HOM05D007195 ORTHO05D008939 1.7e-12 75.9 70 54.3
ClCG02G020450 Citrullus lanatus HOM05D007195 ORTHO05D008939 2.2e-12 75.5 70 52.9
Migut.D02132 Erythranthe guttata HOM05D007195 ORTHO05D008939 2.2e-12 75.5 70 54.3
Potri.001G235400 Populus trichocarpa HOM05D007195 ORTHO05D008939 2.2e-12 75.5 70 58.6
HanXRQChr06g0175991 Helianthus annuus HOM05D007195 ORTHO05D008939 2.9e-12 75.1 70 55.7
Aqoxy4G03018 Aquilegia oxysepala HOM05D007195 ORTHO05D008939 3.8e-12 74.7 70 57.1
COL.COLO4_18444 Corchorus olitorius HOM05D007195 ORTHO05D008939 5.0e-12 74.3 70 58.6
PSO339G1320 Papaver somniferum HOM05D007195 ORTHO05D008939 5.0e-12 74.3 70 54.3
CAN.G420.9 Capsicum annuum HOM05D007195 ORTHO05D008939 6.5e-12 73.9 70 54.3
RcHm_v2.0_Chr5g0062801 Rosa chinensis HOM05D007195 ORTHO05D008939 8.5e-12 73.6 70 58.6
Cpa.g.sc190.38 Carica papaya HOM05D007195 ORTHO05D008939 1.4e-11 72.8 70 58.6
AUR62001839 Chenopodium quinoa HOM05D007195 ORTHO05D008939 1.4e-11 72.8 70 55.7
CsaV3_6G022170 Cucumis sativus L. HOM05D007195 ORTHO05D008939 1.4e-11 72.8 70 52.9
Cfa011446 Carpinus fangiana HOM05D007195 ORTHO05D008939 1.9e-11 72.4 70 57.1
Prupe.6G085100 Prunus persica HOM05D007195 ORTHO05D008939 1.9e-11 72.4 71 56.3
Solyc11g073130.2 Solanum lycopersicum HOM05D007195 ORTHO05D008939 2.5e-11 72.0 70 52.9
CANSAT54G2014 Cannabis sativa HOM05D007195 ORTHO05D008939 3.2e-11 71.6 66 62.1
CiPaw.14G072400 Carya illinoinensis HOM05D007195 ORTHO05D008939 3.2e-11 71.6 70 51.4
Sopen11g030780 Solanum pennellii HOM05D007195 ORTHO05D008939 3.2e-11 71.6 70 52.9
FAN21G0153 Fragaria x ananassa HOM05D007195 ORTHO05D008939 4.2e-11 71.2 71 57.7
FAN25G0594 Fragaria x ananassa HOM05D007195 ORTHO05D008939 4.2e-11 71.2 71 57.7
MSTRG.18595 Avicennia marina HOM05D007195 ORTHO05D008939 5.5e-11 70.9 70 52.9
FvH4_3g34950 Fragaria vesca HOM05D007195 ORTHO05D008939 5.5e-11 70.9 71 56.3
FAN11G1442 Fragaria x ananassa HOM05D007195 ORTHO05D008939 5.5e-11 70.9 71 56.3
Sed0026895 Sechium edule HOM05D007195 ORTHO05D008939 5.5e-11 70.9 70 52.9
THA.LOC104810801 Tarenaya hassleriana HOM05D007195 ORTHO05D008939 7.2e-11 70.5 73 54.8
FAN16G0269 Fragaria x ananassa HOM05D007195 ORTHO05D008939 9.4e-11 70.1 71 57.7
DCAR_018881 Daucus carota HOM05D007195 ORTHO05D008939 2.1e-10 68.9 70 52.9
Thhalv10014612m.g Eutrema salsugineum HOM05D007195 ORTHO05D008939 2.7e-10 68.6 72 54.2
Manes.11G134400 Manihot esculenta HOM05D007195 ORTHO05D008939 2.7e-10 68.6 66 56.1
unitig_899.g14897 Utricularia gibba HOM05D007195 ORTHO05D008939 4.6e-10 67.8 68 55.9
Ciclev10029246m.g Citrus clementina HOM05D007195 ORTHO05D008939 6.1e-10 67.4 64 54.7
BcaB05g22577 Brassica carinata HOM05D007195 ORTHO05D008939 1.8e-09 65.9 72 52.8
BolC2t07319H Brassica oleracea HOM05D007195 ORTHO05D008939 1.8e-09 65.9 73 53.4
Carub.0008s2043 Capsella rubella HOM05D007195 ORTHO05D008939 1.8e-09 65.9 72 54.2
Sp6g21440 Schrenkiella parvula HOM05D007195 ORTHO05D008939 1.8e-09 65.9 79 49.4
AT5G59770 Arabidopsis thaliana HOM05D007195 ORTHO05D008939 3.0e-09 65.1 79 53.2
CARHR273350 Cardamine hirsuta HOM05D007195 ORTHO05D008939 3.9e-09 64.7 79 49.4
Sc12g0001700 Simmondsia chinensis HOM05D007195 ORTHO05D008939 3.9e-09 64.7 70 51.4
TWI79G0669 Tripterygium wilfordii HOM05D007195 ORTHO05D008939 5.1e-09 64.3 70 50.0
BraA02t05767Z Brassica rapa HOM05D007195 ORTHO05D008939 6.7e-09 63.9 73 52.1
AL8G36290 Arabidopsis lyrata HOM05D007195 ORTHO05D008939 1.1e-08 63.2 79 50.6
SEGI_05585 Sequoiadendron giganteum HOM05D007195 ORTHO05D008939 1.1e-08 63.2 69 47.8
Aa31sc23G190 Aethionema arabicum HOM05D007195 ORTHO05D008939 2.5e-08 62.0 63 55.6
ATR0033G009 Amborella trichopoda HOM05D007195 ORTHO05D008939 2.5e-08 62.0 63 50.8
Haze_24028 Corylus avellana HOM05D007195 ORTHO05D008939 4.3e-08 61.2 65 52.3
CDE11G0069 Ceratophyllum demersum HOM05D007195 ORTHO05D008939 9.7e-08 60.1 73 47.9
Pp3c12_26220 Physcomitrium patens HOM05D007195 ORTHO05D008939 9.7e-08 60.1 63 42.9
Os05g0460800 Oryza sativa ssp. japonica HOM05D007195 ORTHO05D008939 4.8e-07 57.8 67 46.3
Zm00001eb351400 Zea mays HOM05D007195 ORTHO05D008939 1.4e-06 56.2 69 40.6
AagrBONN_evm.TU.Sc2ySwM_344.4841 Anthoceros agrestis HOM05D007195 ORTHO05D008939 4.1e-06 54.7 58 48.3
Eucgr.B02402 Eucalyptus grandis HOM05D007195 ORTHO05D008939 4.1e-06 54.7 61 50.8
Mapoly0010s0013 Marchantia polymorpha HOM05D007195 ORTHO05D008939 6.9e-06 53.9 74 39.2


User provided reference genes

Program Settings