Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G044801 Glycine max HOM05D002724 ORTHO05D002995 4.6e-67 257.7 124 100.0
Glyma.07G195900 Glycine max HOM05D002724 ORTHO05D002995 6.1e-27 124.4 85 78.8
Psat7g113520 Pisum sativum HOM05D002724 ORTHO05D002995 3.0e-26 122.1 85 76.5
Ciclev10011146m.g Citrus clementina HOM05D002724 ORTHO05D002995 5.2e-26 121.3 84 75.0
arahy.Tifrunner.gnm1.ann1.9ZT65R Arachis hypogaea HOM05D002724 ORTHO05D002995 8.8e-26 120.6 85 76.5
arahy.Tifrunner.gnm1.ann1.JB3DWX Arachis hypogaea HOM05D002724 ORTHO05D002995 8.8e-26 120.6 85 76.5
Cpa.g.sc27.27 Carica papaya HOM05D002724 ORTHO05D002995 1.1e-25 120.2 84 75.0
Manes.16G027900 Manihot esculenta HOM05D002724 ORTHO05D002995 1.1e-25 120.2 84 77.4
TWI38G0591 Tripterygium wilfordii HOM05D002724 ORTHO05D002995 1.1e-25 120.2 85 75.3
COL.COLO4_31469 Corchorus olitorius HOM05D002724 ORTHO05D002995 1.5e-25 119.8 64 90.6
Glyma.13G180100 Glycine max HOM05D002724 ORTHO05D002995 1.5e-25 119.8 85 76.5
MD05G1339600 Malus domestica HOM05D002724 ORTHO05D002995 1.5e-25 119.8 85 75.3
Medtr4g088885 Medicago truncatula HOM05D002724 ORTHO05D002995 2.0e-25 119.4 85 74.1
Eucgr.E03294 Eucalyptus grandis HOM05D002724 ORTHO05D002995 2.6e-25 119.0 84 75.0
PGR004G1438 Punica granatum HOM05D002724 ORTHO05D002995 2.6e-25 119.0 84 76.2
Nn1g04091 Nelumbo nucifera HOM05D002724 ORTHO05D002995 3.3e-25 118.6 84 75.0
Phvul.002G228500 Phaseolus vulgaris HOM05D002724 ORTHO05D002995 3.3e-25 118.6 85 74.1
QL05p060533 Quercus lobata HOM05D002724 ORTHO05D002995 3.3e-25 118.6 85 72.9
QL05p060587 Quercus lobata HOM05D002724 ORTHO05D002995 3.3e-25 118.6 85 72.9
VMungo0251G0637 Vigna mungo HOM05D002724 ORTHO05D002995 3.3e-25 118.6 85 74.1
Duzib160G0569 Durio zibethinus HOM05D002724 ORTHO05D002995 4.4e-25 118.2 84 75.0
Duzib192G0701 Durio zibethinus HOM05D002724 ORTHO05D002995 4.4e-25 118.2 84 75.0
Gohir.A06G210200 Gossypium hirsutum HOM05D002724 ORTHO05D002995 4.4e-25 118.2 84 75.0
Gohir.D06G210800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 4.4e-25 118.2 84 75.0
Gorai.010G255500 Gossypium raimondii HOM05D002724 ORTHO05D002995 4.4e-25 118.2 84 75.0
Lj4g0025106 Lotus japonicus HOM05D002724 ORTHO05D002995 4.4e-25 118.2 85 75.3
MD10G1294300 Malus domestica HOM05D002724 ORTHO05D002995 4.4e-25 118.2 85 74.1
Sabra04G0027100 Salix brachista HOM05D002724 ORTHO05D002995 4.4e-25 118.2 84 73.8
Atru.chr12.2148 Acer truncatum HOM05D002724 ORTHO05D002995 5.7e-25 117.9 84 73.8
Manes.17G045800 Manihot esculenta HOM05D002724 ORTHO05D002995 5.7e-25 117.9 84 75.0
CiPaw.13G137300 Carya illinoinensis HOM05D002724 ORTHO05D002995 7.5e-25 117.5 84 73.8
CDE08G0699 Ceratophyllum demersum HOM05D002724 ORTHO05D002995 7.5e-25 117.5 84 73.8
Potri.004G043900 Populus trichocarpa HOM05D002724 ORTHO05D002995 7.5e-25 117.5 84 72.6
Thecc.06G187300 Theobroma cacao HOM05D002724 ORTHO05D002995 7.5e-25 117.5 84 73.8
THA.LOC104806293 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 9.7e-25 117.1 84 73.8
THA.LOC104812936 Tarenaya hassleriana HOM05D002724 ORTHO05D002995 9.7e-25 117.1 84 73.8
Gohir.A06G126900 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.3e-24 116.7 64 89.1
Gohir.D06G131800 Gossypium hirsutum HOM05D002724 ORTHO05D002995 1.3e-24 116.7 64 89.1
Gorai.010G153600 Gossypium raimondii HOM05D002724 ORTHO05D002995 1.3e-24 116.7 64 89.1
Lalb_Chr05g0218441 Lupinus albus HOM05D002724 ORTHO05D002995 1.3e-24 116.7 85 74.1
Lalb_Chr09g0327631 Lupinus albus HOM05D002724 ORTHO05D002995 1.3e-24 116.7 85 74.1
QL05p088131 Quercus lobata HOM05D000176 ORTHO05D000106 1.7e-24 116.3 64 87.5
Aa31LG9G9580 Aethionema arabicum HOM05D002724 ORTHO05D002995 2.2e-24 115.9 64 84.4
Prupe.4G047600 Prunus persica HOM05D002724 ORTHO05D002995 2.2e-24 115.9 85 71.8
DCAR_013103 Daucus carota HOM05D002724 ORTHO05D002995 6.3e-24 114.4 84 72.6
DCAR_019550 Daucus carota HOM05D002724 ORTHO05D002995 6.3e-24 114.4 65 87.7
Migut.H01936 Erythranthe guttata HOM05D002724 ORTHO05D002995 6.3e-24 114.4 86 72.1
Lj1C843T17 Lonicera japonica HOM05D002724 ORTHO05D002995 6.3e-24 114.4 84 72.6
Nn1g06543 Nelumbo nucifera HOM05D002724 ORTHO05D002995 6.3e-24 114.4 84 72.6
CSS0016915 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 72.6
CANSAT35G0352 Cannabis sativa HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 71.4
Cfa000464 Carpinus fangiana HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 71.4
Haze_06453 Corylus avellana HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 71.4
Rhsim04G0021300 Rhododendron simsii HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 72.6
Rhsim06G0198500 Rhododendron simsii HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 73.8
Solyc01g104920.3 Solanum lycopersicum HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 69.0
Sopen01g047430 Solanum pennellii HOM05D002724 ORTHO05D002995 8.2e-24 114.0 84 69.0
Cc05_g12070 Coffea canephora HOM05D002724 ORTHO05D002995 1.1e-23 113.6 86 70.9
Lj8A156G76 Lonicera japonica HOM05D002724 ORTHO05D002995 1.1e-23 113.6 84 72.6
Potri.011G052800 Populus trichocarpa HOM05D002724 ORTHO05D002995 1.1e-23 113.6 84 71.4
QL05p060484 Quercus lobata HOM05D002724 ORTHO05D002995 1.1e-23 113.6 85 69.4
Actinidia09684 Actinidia chinensis HOM05D002724 ORTHO05D002995 1.4e-23 113.2 84 72.6
BcaB05g23705 Brassica carinata HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
A03p30230 Brassica napus HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
C03p36480 Brassica napus HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
BraA03t12207Z Brassica rapa HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
Thhalv10028462m.g Eutrema salsugineum HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
Sp6g04050 Schrenkiella parvula HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
SpUn0051_0030 Schrenkiella parvula HOM05D002724 ORTHO05D002995 1.4e-23 113.2 64 84.4
PGSC0003DMG402029739 Solanum tuberosum HOM05D002724 ORTHO05D002995 1.4e-23 113.2 84 69.0
SGA_v2.0_scaffold4G02196 Striga asiatica HOM05D002724 ORTHO05D002995 1.4e-23 113.2 86 69.8
Oeu011340.2 Olea europaea HOM05D002724 ORTHO05D002995 1.8e-23 112.8 78 74.4
SalBow7G4564 Salvia bowleyana HOM05D002724 ORTHO05D002995 1.8e-23 112.8 86 69.8
vmacro11862 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 1.8e-23 112.8 65 86.2
CSS0027753 Camellia sinensis var. sinensis HOM05D002724 ORTHO05D002995 2.4e-23 112.5 84 71.4
FAN22G0708 Fragaria x ananassa HOM05D002724 ORTHO05D002995 2.4e-23 112.5 65 84.6
PSO210G5715 Papaver somniferum HOM05D002724 ORTHO05D002995 2.4e-23 112.5 84 70.2
PSO832G3329 Papaver somniferum HOM05D002724 ORTHO05D002995 2.4e-23 112.5 84 70.2
Sabra11G0036700 Salix brachista HOM05D002724 ORTHO05D002995 3.1e-23 112.1 64 85.9
Actinidia12808 Actinidia chinensis HOM05D002724 ORTHO05D002995 4.1e-23 111.7 64 85.9
ATR0737G106 Amborella trichopoda HOM05D002724 ORTHO05D002995 4.1e-23 111.7 84 70.2
Hma1.2p1_0885F.1_g232610 Hydrangea macrophylla HOM05D002724 ORTHO05D002995 4.1e-23 111.7 84 70.2
Eucgr.E03103 Eucalyptus grandis HOM05D002724 ORTHO05D002995 5.3e-23 111.3 64 84.4
Eucgr.E03298 Eucalyptus grandis HOM05D002724 ORTHO05D002995 5.3e-23 111.3 64 84.4
FAN13G1355 Fragaria x ananassa HOM05D002724 ORTHO05D002995 5.3e-23 111.3 85 69.4
vmacro09533 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 5.3e-23 111.3 84 72.6
Actinidia39068 Actinidia chinensis HOM05D002724 ORTHO05D002995 7.0e-23 110.9 84 72.6
Aqoxy4G00812 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 7.0e-23 110.9 84 69.0
Nitab4.5_0000207g0120 Nicotiana tabacum HOM05D002724 ORTHO05D002995 7.0e-23 110.9 84 69.0
Nitab4.5_0002383g0080 Nicotiana tabacum HOM05D002724 ORTHO05D002995 7.0e-23 110.9 84 69.0
Sed0008019 Sechium edule HOM05D002724 ORTHO05D002995 7.0e-23 110.9 84 70.2
MSTRG.12912 Avicennia marina HOM05D002724 ORTHO05D002995 9.1e-23 110.5 86 67.4
Sc03g0009950 Simmondsia chinensis HOM05D002724 ORTHO05D002995 9.1e-23 110.5 86 67.4
HPP92_011522 Vanilla planifolia HOM05D002724 ORTHO05D002995 9.1e-23 110.5 84 71.4
BcaB01g01846 Brassica carinata HOM05D002724 ORTHO05D002995 1.2e-22 110.2 64 82.8
BcaC04g21344 Brassica carinata HOM05D002724 ORTHO05D002995 1.2e-22 110.2 64 82.8
A09p26000 Brassica napus HOM05D002724 ORTHO05D002995 1.2e-22 110.2 64 82.8
C09p32960 Brassica napus HOM05D002724 ORTHO05D002995 1.2e-22 110.2 64 82.8
BolC9t56131H Brassica oleracea HOM05D002724 ORTHO05D002995 1.2e-22 110.2 64 82.8
BraA09t38166Z Brassica rapa HOM05D002724 ORTHO05D002995 1.2e-22 110.2 64 82.8
MELO3C025549.2 Cucumis melo HOM05D002724 ORTHO05D002995 1.2e-22 110.2 84 70.2
CsaV3_1G017090 Cucumis sativus L. HOM05D002724 ORTHO05D002995 1.2e-22 110.2 84 70.2
ECA236G0664 Erigeron canadensis HOM05D002724 ORTHO05D002995 1.2e-22 110.2 84 69.0
FAN21G2993 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.2e-22 110.2 69 79.7
Oeu019327.1 Olea europaea HOM05D002724 ORTHO05D002995 1.2e-22 110.2 86 67.4
Sc16g0006970 Simmondsia chinensis HOM05D002724 ORTHO05D002995 1.2e-22 110.2 86 68.6
TAR627G0194 Trochodendron aralioides HOM05D002724 ORTHO05D002995 1.2e-22 110.2 84 71.4
AL6G48420 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.6e-22 109.8 64 82.8
Carub.0006s3283 Capsella rubella HOM05D002724 ORTHO05D002995 1.6e-22 109.8 64 82.8
CARHR252620 Cardamine hirsuta HOM05D002724 ORTHO05D002995 1.6e-22 109.8 64 82.8
Haze_06451 Corylus avellana HOM05D002724 ORTHO05D002995 1.6e-22 109.8 65 81.5
HanXRQChr15g0494651 Helianthus annuus HOM05D002724 ORTHO05D002995 1.6e-22 109.8 84 69.0
HanXRQChr11g0328421 Helianthus annuus HOM05D002724 ORTHO05D002995 2.7e-22 109.0 84 67.9
Peaxi162Scf00027g00235 Petunia axillaris HOM05D002724 ORTHO05D002995 2.7e-22 109.0 84 67.9
BolC3t15961H Brassica oleracea HOM05D002724 ORTHO05D002995 3.5e-22 108.6 65 83.1
FvH4_3g09180 Fragaria vesca HOM05D002724 ORTHO05D002995 3.5e-22 108.6 85 68.2
FvH4_4g01380 Fragaria vesca HOM05D002724 ORTHO05D002995 3.5e-22 108.6 64 82.8
FAN11G1358 Fragaria x ananassa HOM05D002724 ORTHO05D002995 3.5e-22 108.6 85 68.2
FAN16G0141 Fragaria x ananassa HOM05D002724 ORTHO05D002995 3.5e-22 108.6 85 68.2
Lsat_1_v5_gn_7_105121 Lactuca sativa HOM05D002724 ORTHO05D002995 3.5e-22 108.6 84 67.9
RcHm_v2.0_Chr5g0008441 Rosa chinensis HOM05D002724 ORTHO05D002995 3.5e-22 108.6 85 68.2
Aqoxy7G02579 Aquilegia oxysepala HOM05D002724 ORTHO05D002995 4.5e-22 108.2 84 66.7
SGA_v2.0_scaffold158G37495 Striga asiatica HOM05D002724 ORTHO05D002995 4.5e-22 108.2 86 68.6
AT4G04910 Arabidopsis thaliana HOM05D002724 ORTHO05D002995 5.9e-22 107.8 64 79.7
CAN.G199.6 Capsicum annuum HOM05D002724 ORTHO05D002995 5.9e-22 107.8 84 66.7
TAR629G0183 Trochodendron aralioides HOM05D002724 ORTHO05D002995 5.9e-22 107.8 84 69.0
GSVIVG01014341001 Vitis vinifera HOM05D002724 ORTHO05D002995 7.7e-22 107.5 86 65.1
unitig_747.g22010 Utricularia gibba HOM05D002724 ORTHO05D002995 1.0e-21 107.1 86 67.4
EL10Ac4g08172 Beta vulgaris HOM05D002724 ORTHO05D002995 1.3e-21 106.7 63 82.5
AUR62004451 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.3e-21 106.7 63 82.5
AUR62034292 Chenopodium quinoa HOM05D002724 ORTHO05D002995 1.3e-21 106.7 86 66.3
SEGI_14067 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 2.2e-21 105.9 64 79.7
Zm00001eb293810 Zea mays HOM05D002724 ORTHO05D002995 2.9e-21 105.5 84 67.9
MBI07_g30175_MAGBIO Magnolia biondii HOM05D002724 ORTHO05D002995 5.0e-21 104.8 84 64.3
SEGI_05908 Sequoiadendron giganteum HOM05D002724 ORTHO05D002995 5.0e-21 104.8 64 78.1
Os05g0519400 Oryza sativa ssp. japonica HOM05D002724 ORTHO05D002995 8.5e-21 104.0 84 67.9
Sed0015434 Sechium edule HOM05D002724 ORTHO05D002995 7.2e-20 100.9 84 63.1
Mapoly0104s0033 Marchantia polymorpha HOM05D002724 ORTHO05D002995 3.6e-19 98.6 64 75.0
Pp3c2_19730 Physcomitrium patens HOM05D002724 ORTHO05D002995 3.6e-19 98.6 64 79.7
Migut.H01935 Erythranthe guttata HOM05D002724 ORTHO05D002995 8.0e-19 97.4 86 60.5
SMO122G0002 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 8.0e-19 97.4 64 73.4
Pp3c10_2610 Physcomitrium patens HOM05D002724 ORTHO05D002995 2.3e-18 95.9 64 75.0
AagrBONN_evm.TU.Sc2ySwM_117.1625 Anthoceros agrestis HOM05D002724 ORTHO05D002995 4.0e-18 95.1 65 69.2
AL7G50070 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 6.8e-18 94.4 86 58.1
CARHR228460 Cardamine hirsuta HOM05D002724 ORTHO05D002995 6.8e-18 94.4 86 61.6
SMO118G0057 Selaginella moellendorffii HOM05D002724 ORTHO05D002995 6.8e-18 94.4 64 71.9
Sp7g19890 Schrenkiella parvula HOM05D002724 ORTHO05D002995 8.8e-18 94.0 64 73.4
PRCOL_00004338 Prasinoderma coloniale HOM05D002724 ORTHO05D002995 1.5e-17 93.2 64 71.9
BcaNung00218 Brassica carinata HOM05D002724 ORTHO05D002995 2.6e-17 92.4 66 68.2
CBR_g39167 Chara braunii HOM05D002724 ORTHO05D002995 4.4e-17 91.7 64 67.2
Cre10.g461250 Chlamydomonas reinhardtii HOM05D002724 ORTHO05D002995 4.4e-17 91.7 63 71.4
BcaNung00220 Brassica carinata HOM05D002724 ORTHO05D002995 9.8e-17 90.5 84 57.1
Eucgr.E03102 Eucalyptus grandis HOM05D002724 ORTHO05D002995 9.8e-17 90.5 64 67.2
MCO11G655 Micromonas commoda HOM05D002724 ORTHO05D002995 9.8e-17 90.5 64 65.6
A01p21430 Brassica napus HOM05D002724 ORTHO05D002995 1.3e-16 90.1 86 55.8
BolC1t02617H Brassica oleracea HOM05D002724 ORTHO05D002995 1.3e-16 90.1 86 55.8
BraA01t02048Z Brassica rapa HOM05D002724 ORTHO05D002995 1.3e-16 90.1 86 55.8
AL7G31640 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 1.7e-16 89.7 86 55.8
BcaC09g50311 Brassica carinata HOM05D002724 ORTHO05D002995 1.7e-16 89.7 86 55.8
C01p26760 Brassica napus HOM05D002724 ORTHO05D002995 1.7e-16 89.7 86 55.8
Eucgr.E03296 Eucalyptus grandis HOM05D002724 ORTHO05D002995 1.7e-16 89.7 64 67.2
FvH4_1g07580 Fragaria vesca HOM05D002724 ORTHO05D002995 1.7e-16 89.7 86 55.8
RcHm_v2.0_Chr3g0472291 Rosa chinensis HOM05D002724 ORTHO05D002995 1.7e-16 89.7 65 67.7
AL7G32210 Arabidopsis lyrata HOM05D002724 ORTHO05D002995 2.2e-16 89.4 81 59.3
FAN05G1795 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.8e-16 88.2 65 66.2
FAN05G4176 Fragaria x ananassa HOM05D002724 ORTHO05D002995 4.8e-16 88.2 65 66.2
FvH4_6g18030 Fragaria vesca HOM05D002724 ORTHO05D002995 1.1e-15 87.0 65 66.2
FAN14G5819 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.1e-15 87.0 65 66.2
FAN26G2256 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.1e-15 87.0 65 66.2
FAN26G3213 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.1e-15 87.0 65 66.2
FAN28G1008 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.1e-15 87.0 65 66.2
Eucgr.E03297 Eucalyptus grandis HOM05D002724 ORTHO05D002995 2.4e-15 85.9 84 54.8
FAN02G2915 Fragaria x ananassa HOM05D002724 ORTHO05D002995 9.1e-15 84.0 65 64.6
FAN19G0887 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.2e-14 83.6 65 64.6
FAN23G2429 Fragaria x ananassa HOM05D002724 ORTHO05D002995 1.2e-14 83.6 65 64.6
FvH4_4g01320 Fragaria vesca HOM05D002724 ORTHO05D002995 2.7e-14 82.4 76 57.9
vmacro09531 Vaccinium macrocarpon HOM05D002724 ORTHO05D002995 1.3e-13 80.1 50 82.0
Pp3c2_16270 Physcomitrium patens HOM05D002724 ORTHO05D002995 2.7e-11 72.4 54 68.5
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.2e-10 68.2 40 80.0
Sp1g30090 Schrenkiella parvula HOM05D002724 ORTHO05D002995 6.8e-10 67.8 115 40.9
RcHm_v2.0_Chr4g0419801 Rosa chinensis HOM05D002724 ORTHO05D002995 1.2e-09 67.0 47 72.3
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.5e-09 66.6 40 77.5
Ca_18540_v3 Cicer arietinum L. HOM05D002724 ORTHO05D002995 2.0e-09 66.2 41 82.9
Ah.06g184140 Amaranthus hybridus HOM05D002724 ORTHO05D002995 5.7e-09 64.7 101 42.6
Cfa024976 Carpinus fangiana HOM05D002724 ORTHO05D002995 7.5e-09 64.3 64 43.8
Ca_04471_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.0e-07 57.8 83 47.0


User provided reference genes

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