Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.12G027967 Glycine max HOM05D001732 ORTHO05D006715 1.2e-55 219.5 111 100.0
Glyma.11G102700 Glycine max HOM05D001732 ORTHO05D006715 8.1e-31 137.1 75 93.3
Glyma.11G102900 Glycine max HOM05D001732 ORTHO05D006715 8.1e-31 137.1 75 93.3
VMungo1215G0739 Vigna mungo HOM05D001732 ORTHO05D006715 2.4e-27 125.6 75 84.0
Lalb_Chr19g0139341 Lupinus albus HOM05D001732 ORTHO05D006715 4.6e-26 121.3 76 77.6
Ciclev10002649m.g Citrus clementina HOM05D001732 ORTHO05D006715 5.1e-25 117.9 84 70.2
arahy.Tifrunner.gnm1.ann1.60EZUA Arachis hypogaea HOM05D001732 ORTHO05D006715 3.3e-24 115.2 73 75.3
arahy.Tifrunner.gnm1.ann1.ND8TJ1 Arachis hypogaea HOM05D001732 ORTHO05D006715 3.3e-24 115.2 73 75.3
Phvul.002G058300 Phaseolus vulgaris HOM05D001732 ORTHO05D006715 4.3e-24 114.8 67 86.6
GSVIVG01008724001 Vitis vinifera HOM05D001732 ORTHO05D006715 4.3e-24 114.8 82 69.5
ECA233G1657 Erigeron canadensis HOM05D001732 ORTHO05D006715 5.6e-24 114.4 73 74.0
Lj3g0013314 Lotus japonicus HOM05D001732 ORTHO05D006715 2.1e-23 112.5 75 74.7
Potri.002G015002 Populus trichocarpa HOM05D001732 ORTHO05D006715 2.8e-23 112.1 79 72.2
Sabra02G0012000 Salix brachista HOM05D001732 ORTHO05D006715 2.8e-23 112.1 79 72.2
Dinv24804 Davidia involucrata HOM05D001732 ORTHO05D006715 3.7e-23 111.7 83 68.7
COL.COLO4_26069 Corchorus olitorius HOM05D001732 ORTHO05D006715 4.8e-23 111.3 72 75.0
Lsat_1_v5_gn_8_28861 Lactuca sativa HOM05D001732 ORTHO05D006715 4.8e-23 111.3 73 71.2
Thecc.08G053200 Theobroma cacao HOM05D001732 ORTHO05D006715 4.8e-23 111.3 72 73.6
Cpa.g.sc128.68 Carica papaya HOM05D001732 ORTHO05D006715 6.2e-23 110.9 79 69.6
Solyc11g008730.2 Solanum lycopersicum HOM05D001732 ORTHO05D006715 6.2e-23 110.9 82 68.3
Sopen11g004510 Solanum pennellii HOM05D001732 ORTHO05D006715 6.2e-23 110.9 82 68.3
PGSC0003DMG402016244 Solanum tuberosum HOM05D001732 ORTHO05D006715 6.2e-23 110.9 82 68.3
SGA_v2.0_scaffold145G36108 Striga asiatica HOM05D001732 ORTHO05D006715 6.2e-23 110.9 78 73.1
Cc10_g01020 Coffea canephora HOM05D001732 ORTHO05D006715 8.2e-23 110.5 73 74.0
vmacro04384 Vaccinium macrocarpon HOM05D001732 ORTHO05D006715 8.2e-23 110.5 72 75.0
Cfa007703 Carpinus fangiana HOM05D001732 ORTHO05D006715 1.1e-22 110.2 74 75.7
MD08G1006500 Malus domestica HOM05D001732 ORTHO05D006715 1.1e-22 110.2 76 72.4
Manes.02G226700 Manihot esculenta HOM05D001732 ORTHO05D006715 1.1e-22 110.2 72 75.0
Prupe.1G358400 Prunus persica HOM05D001732 ORTHO05D006715 1.1e-22 110.2 80 70.0
TAR625G1178 Trochodendron aralioides HOM05D001732 ORTHO05D006715 1.1e-22 110.2 76 71.1
Gorai.007G240300 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.4e-22 109.8 72 75.0
Eucgr.F03702 Eucalyptus grandis HOM05D001732 ORTHO05D006715 1.8e-22 109.4 79 65.8
RcHm_v2.0_Chr6g0303781 Rosa chinensis HOM05D001732 ORTHO05D006715 2.4e-22 109.0 78 67.9
Duzib116G0808 Durio zibethinus HOM05D001732 ORTHO05D006715 3.1e-22 108.6 76 69.7
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 3.1e-22 108.6 73 74.0
Nitab4.5_0000743g0150 Nicotiana tabacum HOM05D001732 ORTHO05D006715 4.0e-22 108.2 73 75.3
Actinidia37958 Actinidia chinensis HOM05D001732 ORTHO05D006715 5.3e-22 107.8 72 72.2
Gohir.D11G222700 Gossypium hirsutum HOM05D001732 ORTHO05D006715 5.3e-22 107.8 72 73.6
ClCG05G015370 Citrullus lanatus HOM05D001732 ORTHO05D006715 6.9e-22 107.5 76 69.7
PGR031G2961 Punica granatum HOM05D001732 ORTHO05D006715 6.9e-22 107.5 72 72.2
CiPaw.04G051700 Carya illinoinensis HOM05D001732 ORTHO05D006715 9.0e-22 107.1 79 67.1
CsaV3_4G036990 Cucumis sativus L. HOM05D001732 ORTHO05D006715 9.0e-22 107.1 76 69.7
Nitab4.5_0005243g0020 Nicotiana tabacum HOM05D001732 ORTHO05D006715 9.0e-22 107.1 73 75.3
Rhsim07G0251800 Rhododendron simsii HOM05D001732 ORTHO05D006715 9.0e-22 107.1 72 69.4
CAN.G691.13 Capsicum annuum HOM05D001732 ORTHO05D006715 1.2e-21 106.7 82 64.6
FAN27G1331 Fragaria x ananassa HOM05D001732 ORTHO05D006715 1.5e-21 106.3 78 66.7
Gohir.A11G200232 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.5e-21 106.3 72 72.2
QL12p036301 Quercus lobata HOM05D001732 ORTHO05D006715 1.5e-21 106.3 78 69.2
EL10Ac1g02055 Beta vulgaris HOM05D001732 ORTHO05D006715 2.0e-21 105.9 72 70.8
FAN20G1153 Fragaria x ananassa HOM05D001732 ORTHO05D006715 2.0e-21 105.9 78 65.4
Peaxi162Scf00254g00422 Petunia axillaris HOM05D001732 ORTHO05D006715 2.0e-21 105.9 77 68.8
Sed0004106 Sechium edule HOM05D001732 ORTHO05D006715 2.6e-21 105.5 76 67.1
TWI12G0398 Tripterygium wilfordii HOM05D001732 ORTHO05D006715 2.6e-21 105.5 72 69.4
Atru.chr13.201 Acer truncatum HOM05D001732 ORTHO05D006715 3.4e-21 105.1 72 69.4
SGA_v2.0_scaffold236G43748 Striga asiatica HOM05D001732 ORTHO05D006715 3.4e-21 105.1 78 70.5
AUR62013855 Chenopodium quinoa HOM05D001732 ORTHO05D006715 5.8e-21 104.4 72 70.8
Haze_14372 Corylus avellana HOM05D001732 ORTHO05D006715 5.8e-21 104.4 74 71.6
MSTRG.2679 Avicennia marina HOM05D001732 ORTHO05D006715 7.6e-21 104.0 73 69.9
AUR62036745 Chenopodium quinoa HOM05D001732 ORTHO05D006715 7.6e-21 104.0 72 69.4
TWI77G0460 Tripterygium wilfordii HOM05D001732 ORTHO05D006715 7.6e-21 104.0 78 67.9
CDE08G0347 Ceratophyllum demersum HOM05D001732 ORTHO05D006715 1.0e-20 103.6 79 64.6
Os04g0663500 Oryza sativa ssp. japonica HOM05D001732 ORTHO05D006715 1.0e-20 103.6 81 63.0
CSS0027369 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D006715 1.3e-20 103.2 72 70.8
Gohir.D04G192600 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.3e-20 103.2 72 69.4
Gohir.1Z049315 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.7e-20 102.8 72 69.4
Gohir.A01G232000 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.7e-20 102.8 72 69.4
Gohir.D02G000300 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.7e-20 102.8 72 69.4
Gohir.D08G006900 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.7e-20 102.8 72 69.4
Gorai.005G000800 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.7e-20 102.8 72 69.4
Gorai.009G456200 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.7e-20 102.8 72 69.4
CSS0031494 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D006715 2.9e-20 102.1 72 68.1
ATR0661G291 Amborella trichopoda HOM05D001732 ORTHO05D006715 4.9e-20 101.3 72 68.1
Gorai.007G379800 Gossypium raimondii HOM05D001732 ORTHO05D006715 6.5e-20 100.9 72 68.1
Gohir.1Z049638 Gossypium hirsutum HOM05D001732 ORTHO05D006715 8.4e-20 100.5 72 68.1
Gohir.D08G275600 Gossypium hirsutum HOM05D001732 ORTHO05D006715 8.4e-20 100.5 72 68.1
Migut.N02762 Erythranthe guttata HOM05D001732 ORTHO05D006715 1.4e-19 99.8 81 63.0
Gorai.006G274900 Gossypium raimondii HOM05D001732 ORTHO05D006715 1.4e-19 99.8 71 69.0
Zm00001eb067320 Zea mays HOM05D001732 ORTHO05D006715 2.5e-19 99.0 72 65.3
Gohir.A11G330000 Gossypium hirsutum HOM05D001732 ORTHO05D006715 3.2e-19 98.6 72 70.8
PSO170G3407 Papaver somniferum HOM05D001732 ORTHO05D006715 3.2e-19 98.6 71 64.8
PSO210G2512 Papaver somniferum HOM05D001732 ORTHO05D006715 3.2e-19 98.6 71 64.8
Manes.02G226801 Manihot esculenta HOM05D001732 ORTHO05D006715 5.5e-19 97.8 72 65.3
SalBow7G3452 Salvia bowleyana HOM05D001732 ORTHO05D006715 7.1e-19 97.4 85 60.0
Gohir.A13G000800 Gossypium hirsutum HOM05D001732 ORTHO05D006715 9.3e-19 97.1 72 68.1
Aqoxy6G01904 Aquilegia oxysepala HOM05D001732 ORTHO05D006715 1.2e-18 96.7 67 70.1
DCAR_016903 Daucus carota HOM05D001732 ORTHO05D006715 1.2e-18 96.7 72 68.1
Gohir.1Z049365 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.2e-18 96.7 72 68.1
Gohir.A08G000020 Gossypium hirsutum HOM05D001732 ORTHO05D006715 1.2e-18 96.7 72 68.1
HPP92_015011 Vanilla planifolia HOM05D001732 ORTHO05D006715 2.1e-18 95.9 72 61.1
THA.LOC104809864 Tarenaya hassleriana HOM05D001732 ORTHO05D006715 4.6e-18 94.7 77 59.7
Ca_03030_v3 Cicer arietinum L. HOM05D001732 ORTHO05D006715 1.3e-17 93.2 70 70.0
FAN15G0072 Fragaria x ananassa HOM05D001732 ORTHO05D006715 1.8e-17 92.8 112 46.4
HanXRQChr08g0215241 Helianthus annuus HOM05D001732 ORTHO05D006715 3.9e-17 91.7 73 63.0
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 3.9e-17 91.7 83 62.7
Nn3g18505 Nelumbo nucifera HOM05D001732 ORTHO05D006715 3.9e-17 91.7 60 73.3
A03p35490 Brassica napus HOM05D001732 ORTHO05D006715 6.7e-17 90.9 73 61.6
BcaB03g14675 Brassica carinata HOM05D001732 ORTHO05D006715 8.7e-17 90.5 66 65.2
C03p43150 Brassica napus HOM05D001732 ORTHO05D006715 8.7e-17 90.5 66 65.2
BolC3t16584H Brassica oleracea HOM05D001732 ORTHO05D006715 8.7e-17 90.5 66 65.2
Aa31LG5G18420 Aethionema arabicum HOM05D001732 ORTHO05D006715 1.1e-16 90.1 67 64.2
Actinidia29773 Actinidia chinensis HOM05D001732 ORTHO05D006715 1.5e-16 89.7 74 64.9
Medtr4g074450 Medicago truncatula HOM05D001732 ORTHO05D006715 1.5e-16 89.7 70 65.7
TPR.G32336 Trifolium pratense HOM05D001732 ORTHO05D006715 1.9e-16 89.4 70 67.1
Oeu017913.1 Olea europaea HOM05D001732 ORTHO05D006715 2.5e-16 89.0 58 74.1
unitig_0.g2094 Utricularia gibba HOM05D000560 ORTHO05D000417 2.5e-16 89.0 72 58.3
AT3G07860 Arabidopsis thaliana HOM05D001732 ORTHO05D006715 3.3e-16 88.6 66 63.6
BraA03t12726Z Brassica rapa HOM05D001732 ORTHO05D006715 3.3e-16 88.6 66 63.6
AL3G19230 Arabidopsis lyrata HOM05D001732 ORTHO05D006715 4.3e-16 88.2 66 63.6
BcaB03g14676 Brassica carinata HOM05D001732 ORTHO05D006715 4.3e-16 88.2 69 59.4
Carub.0003s0744 Capsella rubella HOM05D001732 ORTHO05D006715 4.3e-16 88.2 66 63.6
Sp3g06780 Schrenkiella parvula HOM05D001732 ORTHO05D006715 5.7e-16 87.8 66 62.1
Thhalv10021648m.g Eutrema salsugineum HOM05D001732 ORTHO05D006715 7.4e-16 87.4 67 61.2
CANSAT25G2855 Cannabis sativa HOM05D001732 ORTHO05D006715 1.3e-15 86.7 77 62.3
AagrBONN_evm.TU.Sc2ySwM_340.241 Anthoceros agrestis HOM05D001732 ORTHO05D006715 1.6e-15 86.3 66 57.6
Pp3c18_13370 Physcomitrium patens HOM05D001732 ORTHO05D006715 8.2e-15 84.0 66 56.1
AagrBONN_evm.TU.Sc2ySwM_117.2831 Anthoceros agrestis HOM05D001732 ORTHO05D006715 1.4e-14 83.2 66 54.5
CARHR082580 Cardamine hirsuta HOM05D001732 ORTHO05D006715 1.4e-14 83.2 67 56.7
MBI08_g41940_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 1.8e-14 82.8 59 64.4
MBI08_g43115_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 1.8e-14 82.8 59 64.4
MBI08_g46842_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D006715 1.8e-14 82.8 59 64.4
Mapoly0095s0017 Marchantia polymorpha HOM05D001732 ORTHO05D006715 3.1e-14 82.0 66 53.0
SHI43126 Sapria himalayana HOM05D001732 ORTHO05D006715 1.7e-12 76.3 59 59.3
Psat6g203000 Pisum sativum HOM05D001732 ORTHO05D006715 1.1e-11 73.6 62 64.5
Gorai.004G294300 Gossypium raimondii HOM05D001732 ORTHO05D006715 9.4e-11 70.5 55 61.8
CBR_g49713 Chara braunii HOM05D006523 ORTHO05D008212 1.4e-09 66.6 58 50.0
BcaC07g41028 Brassica carinata HOM05D001732 ORTHO05D006715 2.3e-09 65.9 47 63.8
C02p36660 Brassica napus HOM05D001732 ORTHO05D006715 2.3e-09 65.9 53 58.5
BcaC03g15897 Brassica carinata HOM05D001732 ORTHO05D006715 3.0e-09 65.5 53 56.6
C07p09830 Brassica napus HOM05D001732 ORTHO05D006715 3.9e-09 65.1 95 42.1
CBR_g48797 Chara braunii HOM05D001732 ORTHO05D006715 6.7e-09 64.3 56 48.2
Aqoxy2G01192 Aquilegia oxysepala HOM05D001732 ORTHO05D006715 3.3e-08 62.0 49 63.3
BcaB06g26153 Brassica carinata HOM05D001732 ORTHO05D006715 3.3e-08 62.0 53 54.7
BcaC06g35903 Brassica carinata HOM05D001732 ORTHO05D006715 9.7e-08 60.5 55 54.5
Pp3c21_7260 Physcomitrium patens HOM05D001732 ORTHO05D006715 9.7e-08 60.5 66 43.9
BcaC04g20480 Brassica carinata HOM05D001732 ORTHO05D006715 2.8e-07 58.9 66 47.0
Pp3c19_2430 Physcomitrium patens HOM05D001732 ORTHO05D006715 9.1e-06 53.9 56 44.6


User provided reference genes

Program Settings