Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.5e-226 789.3 421 100.0
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 1.3e-201 706.4 366 98.1
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 8.3e-193 677.2 366 93.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.4e-192 675.6 366 92.6
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.0e-191 672.5 366 91.8
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 3.8e-190 668.3 366 92.9
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 2.5e-189 665.6 356 94.1
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 8.9e-187 657.1 366 89.9
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 4.4e-186 654.8 366 89.6
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 8.3e-185 650.6 366 88.0
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.4e-184 649.8 367 88.8
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 7.0e-184 647.5 366 88.5
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 2.3e-174 615.9 357 86.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 9.5e-173 610.5 366 82.5
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 4.7e-172 608.2 369 81.8
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 8.9e-171 604.0 356 87.4
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 2.6e-170 602.4 369 81.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.8e-170 601.3 369 80.8
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 9.9e-170 600.5 343 85.7
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.3e-169 600.1 355 83.4
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.3e-169 600.1 355 83.4
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.3e-169 600.1 345 85.5
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.7e-169 598.6 346 85.3
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 1.4e-168 596.7 373 78.8
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.4e-168 596.7 373 78.8
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.4e-168 594.7 345 85.5
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.4e-168 594.7 345 85.5
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 7.1e-168 594.3 366 82.0
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 9.2e-168 594.0 371 80.1
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 9.2e-168 594.0 366 79.8
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.2e-167 593.6 371 80.9
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.6e-167 593.2 346 82.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 1.3e-166 590.1 369 79.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 3.9e-166 588.6 369 79.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 5.1e-166 588.2 365 80.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 6.6e-166 587.8 345 83.8
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 8.6e-166 587.4 345 82.9
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 3.3e-165 585.5 345 82.9
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 9.5e-165 583.9 366 79.8
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 9.5e-165 583.9 369 77.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.2e-164 583.6 347 83.3
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 1.6e-164 583.2 358 80.4
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.8e-164 582.4 368 80.2
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 3.6e-164 582.0 366 78.7
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 4.7e-164 581.6 370 80.5
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 4.7e-164 581.6 345 81.7
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 6.2e-164 581.3 363 80.2
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.4e-163 580.1 369 79.4
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 3.1e-163 578.9 383 76.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 5.2e-163 578.2 369 76.4
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 5.2e-163 578.2 346 81.8
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 5.2e-163 578.2 363 80.4
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.9e-163 577.4 369 76.7
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 1.5e-162 576.6 366 78.7
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 1.5e-162 576.6 336 83.6
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-162 576.2 369 76.2
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.0e-162 576.2 369 76.4
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-162 575.1 366 77.6
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 5.8e-162 574.7 369 78.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 5.8e-162 574.7 372 76.6
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.8e-162 574.7 372 76.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.8e-162 574.7 372 76.6
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 7.6e-162 574.3 366 77.6
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.3e-161 573.5 344 82.3
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.9e-161 572.4 345 81.4
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 3.8e-161 572.0 414 72.0
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 6.4e-161 571.2 345 80.9
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 6.4e-161 571.2 345 80.9
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 6.4e-161 571.2 346 80.3
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.4e-160 570.1 352 79.0
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.9e-160 569.7 337 83.4
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.9e-160 569.7 351 80.9
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.2e-160 568.9 339 82.3
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 7.1e-160 567.8 335 84.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 3.5e-159 565.5 345 80.9
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.5e-159 565.5 371 75.5
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 4.6e-159 565.1 343 81.3
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 6.0e-159 564.7 345 79.4
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 6.0e-159 564.7 342 79.5
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.0e-158 563.9 342 80.4
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.3e-158 563.5 345 80.6
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.7e-158 563.1 345 80.9
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-158 563.1 345 79.7
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.7e-158 563.1 343 81.0
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.7e-158 563.1 345 79.7
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.7e-158 563.1 362 77.9
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 3.0e-158 562.4 391 73.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 5.1e-158 561.6 345 80.0
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 5.1e-158 561.6 345 80.0
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 5.1e-158 561.6 345 80.0
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 5.1e-158 561.6 333 82.6
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 6.6e-158 561.2 366 76.0
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 8.6e-158 560.8 345 79.7
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.9e-157 559.7 345 79.4
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 4.3e-157 558.5 333 82.0
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 7.3e-157 557.8 343 79.6
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.1e-156 556.2 340 79.7
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 3.6e-156 555.4 332 81.6
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 4.7e-156 555.1 323 84.2
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.1e-155 553.9 381 73.2
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.8e-155 553.1 340 79.4
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 9.9e-154 547.4 352 76.4
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 6.4e-153 544.7 345 78.3
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 4.2e-152 542.0 419 68.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.4e-152 541.6 342 78.4
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 9.3e-152 540.8 374 71.9
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 2.7e-151 539.3 346 77.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.3e-150 536.2 346 76.6
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 3.0e-150 535.8 366 73.2
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 3.0e-150 535.8 344 76.2
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-150 535.0 372 73.1
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.5e-149 533.5 358 75.1
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-149 533.1 343 77.3
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.7e-145 520.0 351 75.8
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 8.4e-145 517.7 285 88.8
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 3.2e-144 515.8 351 74.6
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 9.3e-144 514.2 359 73.8
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 9.3e-144 514.2 324 78.1
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.0e-142 510.8 307 83.1
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-142 510.4 279 87.8
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 9.9e-138 494.2 366 66.7
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 2.2e-137 493.0 336 71.7
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 2.4e-136 489.6 381 68.0
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 3.2e-136 489.2 304 77.6
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.1e-134 481.9 444 59.5
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 5.6e-133 478.4 277 84.8
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.8e-132 476.1 363 68.3
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.8e-132 475.3 349 67.3
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.4e-131 473.0 353 69.4
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.4e-131 473.0 351 66.4
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.2e-130 470.7 334 71.3
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 7.6e-130 468.0 329 68.7
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.9e-129 466.1 331 70.7
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.5e-128 461.8 390 63.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-120 437.6 356 64.3
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 5.5e-120 435.3 270 75.6
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.0e-113 414.5 450 54.2
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-112 410.6 332 66.0
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-105 387.1 325 64.0
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.8e-102 374.8 287 67.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 7.0e-99 365.2 337 56.1
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.5e-98 362.5 361 56.0
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.3e-97 360.9 362 51.9
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 5.7e-93 345.5 249 67.5
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 6.6e-81 305.4 167 89.8
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 2.7e-74 283.5 260 55.8
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.2e-61 241.5 343 45.2
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.3e-52 211.5 381 36.7
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 6.6e-41 172.6 141 62.4
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.2e-37 161.8 120 70.0
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.2e-34 151.8 125 68.0
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.0e-29 134.4 81 79.0
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 2.4e-27 127.5 151 49.7
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.6e-23 114.8 136 48.5
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 9.3e-19 99.0 125 46.4
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 9.3e-19 99.0 117 47.9
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 1.0e-09 68.9 208 25.5
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.8e-09 68.2 97 43.3
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.8e-09 68.2 96 43.8
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 1.9e-08 64.7 205 27.3
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 2.5e-08 64.3 258 25.2
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 3.3e-08 63.9 85 49.4
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 9.7e-08 62.4 199 26.1
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 9.7e-08 62.4 199 26.1
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 2.2e-07 61.2 250 26.4
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.7e-07 60.5 254 26.0
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 3.7e-07 60.5 254 26.0
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 3.7e-07 60.5 282 25.2
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 6.3e-07 59.7 44 56.8
Ca_25752_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 8.2e-07 59.3 43 72.1
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 8.2e-07 59.3 199 23.1
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-06 58.9 199 23.1
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 5.3e-06 56.6 289 23.9


User provided reference genes

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