Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 2189.1 1125 100.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 2117.4 1129 96.6
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1937.9 1125 89.5
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1935.2 1135 88.1
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1900.9 1129 87.2
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1884.4 1127 86.0
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1858.6 1126 85.1
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1845.9 1130 85.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1825.4 1128 84.4
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1815.4 1126 83.8
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1634.4 1139 75.2
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1632.8 1131 76.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1626.7 1140 75.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1605.1 1136 73.7
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1583.9 1139 73.7
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1582.8 1135 72.9
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1561.6 1132 72.3
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1558.5 1135 72.6
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1557.0 1151 72.0
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1555.4 1134 71.8
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1551.2 1143 71.8
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1546.9 1132 72.2
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1541.9 1134 71.6
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1540.8 1134 70.9
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1537.7 1136 71.1
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1534.6 1146 70.6
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1528.8 1156 70.2
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1528.5 1128 71.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1525.4 1130 71.0
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1520.8 1143 71.2
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1517.7 1134 71.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1513.0 1137 70.8
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1511.5 1132 70.7
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1509.6 1138 70.8
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1508.0 1129 70.6
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1504.2 1138 70.5
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1503.8 1129 70.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1144 69.8
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1493.8 1130 70.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1484.2 1135 70.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1482.6 1141 69.1
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1479.9 1131 68.6
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1467.6 1136 68.7
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1465.3 1155 67.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1464.1 1137 69.3
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1461.8 1138 68.4
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1455.7 1126 69.0
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1443.3 1139 68.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1441.0 935 79.9
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1436.8 1138 68.2
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1435.2 1138 68.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1431.0 935 79.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1427.2 1141 67.5
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1414.8 1136 67.7
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1407.1 1140 66.8
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1406.3 1140 66.2
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1406.0 1148 66.0
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1400.6 1138 67.3
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1397.1 1091 67.3
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1396.7 1140 67.0
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1386.7 1139 66.5
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1385.9 1119 66.5
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1383.6 1089 66.4
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1383.2 1085 69.0
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1378.2 1088 66.5
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1375.9 1145 66.2
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 1136 65.1
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1367.1 1098 66.4
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1363.2 1182 62.5
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1355.5 1157 63.8
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1343.6 1149 62.8
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1340.1 1088 66.2
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1337.8 1113 65.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1325.1 1088 66.0
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1323.9 1117 63.3
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1323.1 1111 64.1
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1320.1 1088 65.0
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1317.0 1090 64.8
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1309.7 1143 61.6
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1308.1 1080 64.3
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1303.9 1089 64.6
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1298.9 1077 66.0
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1274.2 1142 61.3
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1263.1 1082 61.9
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1251.9 1083 61.4
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1250.7 1019 67.6
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1231.5 1088 60.9
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1207.6 1292 53.9
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1177.2 1023 64.4
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1174.1 1146 58.5
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1173.7 966 66.8
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1159.4 1085 58.2
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1154.0 952 64.8
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1146.0 1372 50.5
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1140.9 1092 57.1
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1125.5 1128 57.2
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1125.2 1101 57.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1114.8 1071 58.5
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.8e-296 1022.3 1020 58.5
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 8.2e-296 1020.8 929 61.0
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.4e-287 993.4 1037 55.9
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 3.8e-285 985.3 895 62.8
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 6.1e-251 871.7 796 63.4
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.6e-235 819.3 1106 43.1
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.2e-232 810.1 895 55.6
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.2e-232 810.1 1132 43.6
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.5e-228 797.3 1133 41.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 1.5e-228 797.3 1100 42.2
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.3e-228 795.8 1125 42.8
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 2.1e-227 793.5 703 59.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 5.4e-223 778.9 985 50.4
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 7.8e-222 775.0 798 56.3
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.8e-219 766.5 899 52.5
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 8.4e-208 728.4 646 63.0
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 3.3e-204 716.5 702 56.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.7e-200 704.1 1048 38.7
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.3e-197 694.5 520 66.0
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.8e-181 641.0 524 62.6
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 2.0e-177 627.5 423 77.8
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 7.6e-177 625.5 431 76.6
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 8.5e-160 568.9 521 58.5
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 2.1e-142 511.1 486 57.4
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.1e-138 497.3 401 67.8
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.3e-119 434.1 345 66.4
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 6.4e-107 393.3 228 82.0
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.4e-106 392.1 341 62.5
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.1e-106 390.6 666 38.9
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.3e-101 374.8 820 31.8
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 1.9e-95 355.1 351 54.7
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.9e-87 328.6 186 80.6
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.4e-84 317.8 344 54.1
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 3.0e-80 304.7 230 72.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.2e-78 297.0 1088 26.1
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.9e-74 285.4 195 72.3
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 3.0e-72 278.1 1274 23.2
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 1.6e-70 272.3 515 36.1
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 2.0e-68 265.4 193 72.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 2.5e-66 258.5 141 87.2
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 3.2e-66 258.1 141 88.7
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-63 249.6 142 83.8
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 3.7e-62 244.6 239 56.1
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 8.5e-59 233.4 251 53.0
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.8e-53 215.7 169 70.4
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.8e-53 215.7 169 70.4
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.4e-53 215.3 555 32.4
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.5e-52 212.6 118 83.9
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 3.8e-51 208.0 116 84.5
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 2.7e-49 201.8 116 81.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 7.9e-49 200.3 146 78.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 9.7e-47 193.4 140 75.0
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 7.2e-42 177.2 131 66.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.6e-41 176.0 1164 20.9
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.6e-41 176.0 137 75.2
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 6.1e-41 174.1 134 76.1
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 2.6e-36 158.7 83 92.8
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.5e-36 158.3 191 51.8
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 5.9e-36 157.5 82 87.8
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.8e-35 154.8 112 73.2
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 1.1e-34 153.3 134 64.2
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.4e-32 146.4 83 80.7
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.2e-30 139.0 110 65.5
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.1e-29 136.7 88 86.4
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.4e-29 136.3 162 50.0
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.2e-28 133.3 165 49.1
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 2.2e-27 129.0 148 48.0
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 6.5e-27 127.5 134 51.5
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 2.5e-26 125.6 115 59.1
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.4e-24 119.8 125 60.0
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.9e-20 104.4 102 52.0
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-19 102.8 85 56.5
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.2e-18 98.2 95 55.8
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 7.2e-18 97.4 87 55.2
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.0e-12 79.3 49 81.6
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 2.5e-10 72.4 59 69.5
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.6e-09 69.7 43 74.4
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 4.4e-07 61.6 45 62.2


User provided reference genes

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