Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G157558 Glycine max HOM05D004161 ORTHO05D213254 9.9e-52 206.5 101 100.0
ATR0580G326 Amborella trichopoda HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
Eucgr.C02093 Eucalyptus grandis HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
Glyma.04G075000 Glycine max HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
Glyma.06G076000 Glycine max HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
Os04g0654700 Oryza sativa ssp. japonica HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
SEGI_39146 Sequoiadendron giganteum HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
THA.LOC104821862 Tarenaya hassleriana HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
HPP92_017054 Vanilla planifolia HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
VMungo1309G2307 Vigna mungo HOM05D004161 ORTHO05D005770 4.7e-09 64.7 31 93.5
Aa31LG4G9280 Aethionema arabicum HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
AL1G36480 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
AL2G30840 Arabidopsis lyrata HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
AT1G22920 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
arahy.Tifrunner.gnm1.ann1.T9YY8P Arachis hypogaea HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
BcaB03g14179 Brassica carinata HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
BcaB07g32287 Brassica carinata HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
BcaC05g26198 Brassica carinata HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
A07p14130 Brassica napus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
A09p41820 Brassica napus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
C05p22060 Brassica napus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
BolC5t30902H Brassica oleracea HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
BraA09t39671Z Brassica rapa HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
CANSAT25G1154 Cannabis sativa HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Carub.0001s2242 Capsella rubella HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Carub.0002s1811 Capsella rubella HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
CARHR023300 Cardamine hirsuta HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Cfa013264 Carpinus fangiana HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Ca_15670_v3 Cicer arietinum L. HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Haze_21728 Corylus avellana HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
DCAR_027524 Daucus carota HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Thhalv10008042m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Lj1g0012076 Lotus japonicus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Lalb_Chr08g0243601 Lupinus albus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Lalb_Chr23g0269071 Lupinus albus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Medtr3g108790 Medicago truncatula HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Phvul.009G100700 Phaseolus vulgaris HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Pp3c18_17430 Physcomitrium patens HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Pp3c21_1460 Physcomitrium patens HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Psat5g024160 Pisum sativum HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
SalBow4G1531 Salvia bowleyana HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Sp1g20380 Schrenkiella parvula HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Sp5g26420 Schrenkiella parvula HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
Hund03286 Selenicereus undatus HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
TPR.G12320 Trifolium pratense HOM05D004161 ORTHO05D005770 1.0e-08 63.5 31 90.3
AT1G71230 Arabidopsis thaliana HOM05D004161 ORTHO05D005770 1.4e-08 63.2 31 87.1
BcaC06g35004 Brassica carinata HOM05D004161 ORTHO05D005770 1.4e-08 63.2 31 90.3
C07p20800 Brassica napus HOM05D004161 ORTHO05D005770 1.4e-08 63.2 31 90.3
BolC7t42612H Brassica oleracea HOM05D004161 ORTHO05D005770 1.4e-08 63.2 31 90.3
PSO063G1389 Papaver somniferum HOM05D004161 ORTHO05D005770 1.4e-08 63.2 31 87.1
PSO170G5806 Papaver somniferum HOM05D004161 ORTHO05D005770 1.4e-08 63.2 31 87.1
Atru.chr7.2634 Acer truncatum HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Actinidia34376 Actinidia chinensis HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
AagrBONN_evm.TU.Sc2ySwM_117.740 Anthoceros agrestis HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
MSTRG.13941 Avicennia marina HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Cpa.g.sc23.7 Carica papaya HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
CiPaw.07G213300 Carya illinoinensis HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
CiPaw.08G019300 Carya illinoinensis HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
ClCG08G012710 Citrullus lanatus HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Cc08_g06790 Coffea canephora HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
COL.COLO4_19041 Corchorus olitorius HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
MELO3C011193.2 Cucumis melo HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
CsaV3_2G031440 Cucumis sativus L. HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Dinv10170 Davidia involucrata HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Duzib168G1137 Durio zibethinus HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Gohir.A05G064800 Gossypium hirsutum HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Gohir.D05G067400 Gossypium hirsutum HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Gorai.009G068200 Gossypium raimondii HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
MBI16_g31792_MAGBIO Magnolia biondii HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Manes.03G003400 Manihot esculenta HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Nn2g12726 Nelumbo nucifera HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Potri.018G006100 Populus trichocarpa HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
PGR142G1061 Punica granatum HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Sc09g0010220 Simmondsia chinensis HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
SGA_v2.0_scaffold121G33036 Striga asiatica HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
SGA_v2.0_scaffold169G38590 Striga asiatica HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
Thecc.09G006500 Theobroma cacao HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
TWI32G1088 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
TWI34G1526 Tripterygium wilfordii HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
TAR626G0400 Trochodendron aralioides HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
GSVIVG01023827001 Vitis vinifera HOM05D004161 ORTHO05D005770 1.8e-08 62.8 31 90.3
CDE04G3237 Ceratophyllum demersum HOM05D004161 ORTHO05D005770 2.3e-08 62.4 31 90.3
MD08G1130400 Malus domestica HOM05D004161 ORTHO05D005770 2.3e-08 62.4 31 87.1
MD15G1108500 Malus domestica HOM05D004161 ORTHO05D005770 2.3e-08 62.4 31 87.1
Mapoly0006s0112 Marchantia polymorpha HOM05D004161 ORTHO05D005770 2.3e-08 62.4 31 87.1
SalBow8G4837 Salvia bowleyana HOM05D004161 ORTHO05D005770 2.3e-08 62.4 31 87.1
Zm00001eb068020 Zea mays HOM05D004161 ORTHO05D005770 2.3e-08 62.4 30 93.3
Aqoxy7G02966 Aquilegia oxysepala HOM05D004161 ORTHO05D005770 3.0e-08 62.0 31 83.9
BraA07t29171Z Brassica rapa HOM05D004161 ORTHO05D005770 3.0e-08 62.0 31 87.1
Migut.E01406 Erythranthe guttata HOM05D004161 ORTHO05D005770 3.0e-08 62.0 31 87.1
Ah.11g043770 Amaranthus hybridus HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
EL10Ac2g03746 Beta vulgaris HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
CSS0014609 Camellia sinensis var. sinensis HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
CAN.G65.161 Capsicum annuum HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
AUR62009062 Chenopodium quinoa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
AUR62020608 Chenopodium quinoa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Ciclev10008736m.g Citrus clementina HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Duzib187G0390 Durio zibethinus HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
FvH4_2g36890 Fragaria vesca HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
FAN15G1150 Fragaria x ananassa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
FAN20G0045 Fragaria x ananassa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
FAN27G0727 Fragaria x ananassa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Hma1.2p1_0432F.1_g151800 Hydrangea macrophylla HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Lsat_1_v5_gn_3_9100 Lactuca sativa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Lj7C749T8 Lonicera japonica HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Nitab4.5_0001586g0240 Nicotiana tabacum HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Nitab4.5_0002553g0070 Nicotiana tabacum HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Peaxi162Scf00180g00518 Petunia axillaris HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Potri.006G275100 Populus trichocarpa HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Prupe.1G460800 Prunus persica HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
QL12p025061 Quercus lobata HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Rhsim11G0155000 Rhododendron simsii HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
RhsimUnG0126200 Rhododendron simsii HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
RcHm_v2.0_Chr6g0304891 Rosa chinensis HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Sabra06G0212900 Salix brachista HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Sabra18G0014200 Salix brachista HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
SMO367G0024 Selaginella moellendorffii HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Solyc11g017300.2 Solanum lycopersicum HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Sopen06g029500 Solanum pennellii HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
Sopen11g009190 Solanum pennellii HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
PGSC0003DMG400026918 Solanum tuberosum HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
unitig_0.g2820 Utricularia gibba HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
unitig_747.g21902 Utricularia gibba HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
vmacro01979 Vaccinium macrocarpon HOM05D004161 ORTHO05D005770 4.0e-08 61.6 31 87.1
arahy.Tifrunner.gnm1.ann1.DD3LGG Arachis hypogaea HOM05D004161 ORTHO05D005770 5.2e-08 61.2 30 90.0
Thhalv10018788m.g Eutrema salsugineum HOM05D004161 ORTHO05D005770 5.2e-08 61.2 31 83.9
HanXRQChr17g0533271 Helianthus annuus HOM05D004161 ORTHO05D005770 5.2e-08 61.2 31 83.9
Manes.16G136100 Manihot esculenta HOM05D004161 ORTHO05D005770 5.2e-08 61.2 31 90.3
PGSC0003DMG400009240 Solanum tuberosum HOM05D004161 ORTHO05D005770 5.2e-08 61.2 31 83.9
Gohir.D06G108400 Gossypium hirsutum HOM05D004161 ORTHO05D005770 6.7e-08 60.8 31 87.1
Gorai.010G123100 Gossypium raimondii HOM05D004161 ORTHO05D005770 6.7e-08 60.8 31 87.1
CARHR064530 Cardamine hirsuta HOM05D004161 ORTHO05D005770 1.5e-07 59.7 31 83.9
ECA246G1306 Erigeron canadensis HOM05D004161 ORTHO05D005770 1.5e-07 59.7 31 83.9
Oeu019278.1 Olea europaea HOM05D004161 ORTHO05D005770 1.5e-07 59.7 31 87.1
Gohir.A06G106200 Gossypium hirsutum HOM05D004161 ORTHO05D005770 2.0e-07 59.3 31 83.9
Sed0011095 Sechium edule HOM05D004161 ORTHO05D005770 2.0e-07 59.3 31 83.9
Sed0017284 Sechium edule HOM05D004161 ORTHO05D005770 2.6e-07 58.9 31 83.9
Solyc06g073150.3 Solanum lycopersicum HOM05D004161 ORTHO05D005770 3.3e-07 58.5 31 83.9
Cre09.g399178 Chlamydomonas reinhardtii HOM05D004161 ORTHO05D005770 8.2e-06 53.9 30 80.0


User provided reference genes

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