Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.1e-299 1031.6 510 100.0
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.1e-287 990.7 510 96.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 2.2e-272 941.8 490 94.9
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.9e-272 941.4 511 91.0
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.7e-269 932.2 512 90.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 6.6e-269 930.2 504 91.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.0e-266 922.9 489 93.3
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 5.4e-263 910.6 504 89.7
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 4.4e-257 891.0 526 84.6
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.6e-246 854.4 503 85.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.3e-244 847.8 520 82.5
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.3e-244 847.0 501 83.6
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 4.7e-243 844.3 501 84.0
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.1e-242 843.2 501 83.8
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-242 842.8 501 83.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-242 842.8 501 83.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-242 842.0 501 83.8
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.4e-241 838.2 513 81.1
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.3e-240 836.3 519 80.3
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.2e-239 831.6 504 82.7
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.1e-238 828.9 505 81.2
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.7e-238 828.6 502 81.5
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.0e-237 826.6 511 81.8
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 2.3e-237 825.5 513 80.5
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.1e-234 816.6 512 79.9
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.4e-234 815.5 515 78.6
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 3.4e-233 811.6 521 78.5
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 4.9e-232 807.7 505 80.4
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 8.4e-232 807.0 521 78.1
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.9e-231 805.8 505 79.2
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.4e-231 805.4 512 78.9
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 7.1e-231 803.9 521 77.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 6.0e-230 800.8 514 77.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 3.0e-229 798.5 501 80.0
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 7.4e-228 793.9 501 79.2
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 4.0e-226 788.1 511 75.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.2e-225 786.6 500 79.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.2e-225 786.6 521 76.4
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.0e-225 785.8 521 76.8
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 9.9e-225 783.5 514 77.4
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-224 783.1 501 78.6
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.8e-224 781.6 508 77.0
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 4.9e-224 781.2 511 75.7
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.9e-223 779.2 515 77.3
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 3.2e-223 778.5 520 75.8
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 4.2e-223 778.1 512 75.4
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.7e-222 775.4 516 77.1
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.5e-222 775.0 515 76.5
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 4.6e-222 774.6 500 78.0
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 4.6e-222 774.6 508 75.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.6e-222 774.6 538 73.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 5.1e-221 771.2 516 76.7
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 3.3e-220 768.5 519 74.2
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 9.6e-220 766.9 518 75.9
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 2.8e-219 765.4 458 83.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.7e-219 765.0 514 74.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 6.2e-219 764.2 513 76.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 8.2e-219 763.8 512 74.4
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 8.2e-219 763.8 520 75.2
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.6e-217 758.8 524 75.8
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.6e-217 757.3 496 76.8
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 7.6e-217 757.3 550 71.1
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.3e-216 756.5 463 82.5
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.3e-216 756.5 528 73.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.9e-216 755.4 517 73.7
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.9e-216 755.4 517 73.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 4.9e-216 754.6 509 74.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.9e-215 752.7 511 74.8
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.2e-215 751.5 515 75.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 7.9e-214 747.3 519 75.3
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.3e-213 746.5 495 76.2
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.3e-213 746.5 495 76.0
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.8e-213 746.1 509 72.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.5e-212 743.0 516 73.6
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 4.3e-212 741.5 532 71.4
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.4e-210 735.7 497 75.5
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.1e-210 734.9 516 71.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 4.1e-210 734.9 545 70.3
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.5e-209 733.0 517 72.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.9e-208 728.8 511 72.8
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 8.5e-208 727.2 510 72.4
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.2e-207 725.3 507 71.0
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 9.3e-207 723.8 475 75.4
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 4.6e-206 721.5 588 66.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.9e-205 718.4 510 70.4
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.8e-203 711.4 525 69.1
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.3e-200 703.4 484 75.0
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.7e-200 703.0 518 69.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.2e-200 702.6 469 75.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.8e-200 701.8 469 75.1
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.8e-200 701.8 431 82.1
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.0e-200 701.4 516 70.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 8.8e-197 690.6 512 70.5
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.5e-193 679.9 376 89.9
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 2.5e-191 672.5 502 69.7
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-189 666.4 409 82.2
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.6e-185 652.5 437 74.1
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.9e-183 646.4 530 64.3
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 8.0e-182 641.0 534 63.5
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 5.7e-180 634.8 471 70.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.0e-172 609.8 511 61.4
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.4e-170 603.6 517 59.2
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 8.6e-168 594.3 483 63.1
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.6e-166 589.0 481 63.6
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 6.8e-165 584.7 488 63.1
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 8.3e-163 577.8 451 66.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 3.3e-159 565.8 340 82.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.5e-156 557.0 504 57.9
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.6e-153 545.4 474 60.3
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 7.8e-153 544.7 370 77.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 9.5e-151 537.7 368 75.5
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.1e-150 536.6 370 75.9
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.6e-150 535.8 353 78.5
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.1e-149 534.3 478 57.5
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.4e-149 533.9 502 55.4
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-147 526.9 294 86.1
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 3.2e-146 522.7 523 53.9
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.6e-145 520.4 392 68.9
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.0e-141 505.8 489 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.1e-135 487.6 512 50.8
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.4e-133 479.9 357 70.9
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.4e-132 475.7 316 78.2
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 2.1e-129 466.8 337 73.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 6.4e-123 445.3 409 60.6
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.1e-114 417.9 409 52.6
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.0e-109 398.3 469 52.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.7e-107 394.0 365 61.1
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.0e-88 330.1 232 73.7
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.0e-84 317.4 316 57.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-83 314.7 162 88.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.6e-81 306.6 293 59.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.4e-80 304.7 249 63.5
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-78 298.1 217 66.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-77 294.7 146 94.5
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.3e-72 277.3 397 40.8
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 5.3e-69 266.2 145 86.2
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.2e-64 249.6 145 80.0
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.0e-59 235.3 216 61.1
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 2.2e-59 234.2 306 42.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 7.0e-53 212.6 330 40.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 9.8e-47 192.2 165 58.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.6e-41 173.7 129 68.2
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-37 161.8 117 74.4
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.2e-37 159.1 104 71.2
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.6e-36 156.8 198 48.5
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.7e-30 137.1 351 29.1
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-29 134.8 68 91.2
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.6e-20 105.1 62 75.8
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 6.2e-17 93.2 65 70.8
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.5e-15 88.6 72 63.9
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.1e-13 82.4 45 86.7
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 9.2e-13 79.3 38 94.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-10 71.6 64 60.9
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 9.6e-10 69.3 50 62.0
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.0e-08 63.9 83 45.8
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.0e-08 62.8 46 56.5
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 8.4e-06 56.2 109 40.4


User provided reference genes

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