Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 5.2e-50 201.4 165 100.0
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 6.2e-27 124.8 165 78.2
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 9.3e-23 110.9 169 58.0
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 1.9e-20 103.2 166 60.8
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 4.9e-16 88.6 74 70.3
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-15 87.0 75 70.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 1.4e-15 87.0 75 70.7
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.4e-15 86.3 69 71.0
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 2.4e-15 86.3 69 71.0
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 2.4e-15 86.3 74 68.9
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 4.2e-15 85.5 73 68.5
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 5.5e-15 85.1 67 74.6
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 1.2e-14 84.0 68 67.6
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 3.5e-14 82.4 69 65.2
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 1.8e-13 80.1 68 63.2
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.0e-13 79.3 66 66.7
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 3.9e-13 79.0 70 61.4
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 5.1e-13 78.6 67 64.2
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 2.5e-12 76.3 72 61.1
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 2.5e-12 76.3 68 64.7
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 3.3e-12 75.9 51 76.5
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 4.3e-12 75.5 61 67.2
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 4.3e-12 75.5 69 62.3
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.3e-12 75.5 62 64.5
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 7.4e-12 74.7 71 63.4
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 7.4e-12 74.7 71 63.4
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 9.6e-12 74.3 72 59.7
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.6e-11 73.6 66 65.2
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.6e-11 73.6 66 60.6
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.7e-11 72.4 69 62.3
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.7e-11 72.4 51 74.5
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 6.2e-11 71.6 55 65.5
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 6.2e-11 71.6 74 56.8
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 6.2e-11 71.6 56 62.5
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 6.2e-11 71.6 67 61.2
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 8.1e-11 71.2 74 56.8
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 1.1e-10 70.9 72 54.2
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 1.1e-10 70.9 60 65.0
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.4e-10 70.5 69 55.1
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 2.4e-10 69.7 75 54.7
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.4e-10 69.7 74 55.4
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.4e-10 69.7 68 57.4
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 4.0e-10 68.9 69 58.0
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 5.3e-10 68.6 69 58.0
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 5.3e-10 68.6 69 58.0
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 5.3e-10 68.6 67 58.2
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 9.0e-10 67.8 69 56.5
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 9.0e-10 67.8 75 54.7
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 9.0e-10 67.8 69 55.1
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 9.0e-10 67.8 69 52.2
MSTRG.21125 Avicennia marina HOM05D004188 ORTHO05D004445 1.2e-09 67.4 56 66.1
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.2e-09 67.4 73 54.8
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 1.2e-09 67.4 60 60.0
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 1.5e-09 67.0 63 60.3
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 2.0e-09 66.6 67 49.3
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 2.6e-09 66.2 66 47.0
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 2.6e-09 66.2 52 67.3
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 3.4e-09 65.9 57 61.4
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 3.4e-09 65.9 62 59.7
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 4.5e-09 65.5 67 52.2
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 4.5e-09 65.5 72 52.8
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 4.5e-09 65.5 60 61.7
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 4.5e-09 65.5 65 55.4
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 5.8e-09 65.1 56 62.5
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 7.6e-09 64.7 59 57.6
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 7.6e-09 64.7 66 53.0
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 7.6e-09 64.7 46 65.2
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.0e-08 64.3 54 68.5
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 1.0e-08 64.3 54 68.5
Rhsim13G0094200 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.0e-08 64.3 58 56.9
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 1.0e-08 64.3 52 67.3
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 1.3e-08 63.9 66 56.1
Dinv31327 Davidia involucrata HOM05D001979 ORTHO05D001961 1.3e-08 63.9 48 62.5
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 1.3e-08 63.9 64 60.9
Peaxi162Scf00092g00152 Petunia axillaris HOM05D004188 ORTHO05D004445 1.7e-08 63.5 67 55.2
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.7e-08 63.5 67 55.2
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 2.2e-08 63.2 66 51.5
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 2.2e-08 63.2 62 54.8
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.9e-08 62.8 51 62.7
Actinidia24099 Actinidia chinensis HOM05D004188 ORTHO05D004445 3.8e-08 62.4 63 55.6
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 3.8e-08 62.4 67 53.7
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 6.5e-08 61.6 60 56.7
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 8.4e-08 61.2 54 59.3
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 8.4e-08 61.2 56 51.8
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 8.4e-08 61.2 63 57.1
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 1.1e-07 60.8 68 50.0
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 1.1e-07 60.8 54 59.3
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.4e-07 60.5 68 50.0
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 1.4e-07 60.5 63 54.0
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.4e-07 60.5 74 50.0
Actinidia03061 Actinidia chinensis HOM05D004188 ORTHO05D004445 2.5e-07 59.7 51 60.8
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 2.5e-07 59.7 63 54.0
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 2.5e-07 59.7 63 54.0
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 2.5e-07 59.7 63 54.0
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 2.5e-07 59.7 63 54.0
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 2.5e-07 59.7 63 54.0
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 3.2e-07 59.3 60 55.0
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 3.2e-07 59.3 64 51.6
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 4.2e-07 58.9 61 50.8
Peaxi162Scf00270g00089 Petunia axillaris HOM05D004188 ORTHO05D004445 5.5e-07 58.5 64 56.2
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 5.5e-07 58.5 53 54.7
Solyc11g069390.1 Solanum lycopersicum HOM05D004188 ORTHO05D004445 5.5e-07 58.5 46 65.2
Carub.0005s1101 Capsella rubella HOM05D004188 ORTHO05D004445 7.1e-07 58.2 70 50.0
Lsat_1_v5_gn_2_98481 Lactuca sativa HOM05D004188 ORTHO05D004445 7.1e-07 58.2 64 48.4
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 7.1e-07 58.2 70 52.9
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 9.3e-07 57.8 71 49.3
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 9.3e-07 57.8 60 55.0
PSO063G5002 Papaver somniferum HOM05D011190 ORTHO05D004445 9.3e-07 57.8 67 49.3
PSO339G4510 Papaver somniferum HOM05D011190 ORTHO05D004445 9.3e-07 57.8 67 49.3
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 1.2e-06 57.4 61 50.8
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 1.2e-06 57.4 59 59.3
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.6e-06 57.0 72 51.4
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 1.6e-06 57.0 72 44.4
Dinv32748 Davidia involucrata HOM05D004188 ORTHO05D004445 1.6e-06 57.0 68 52.9
HPP92_008764 Vanilla planifolia HOM05D004188 ORTHO05D004445 1.6e-06 57.0 57 49.1
AT2G28440 Arabidopsis thaliana HOM05D011190 ORTHO05D013686 2.7e-06 56.2 50 56.0
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 2.7e-06 56.2 47 61.7
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 3.5e-06 55.8 66 48.5
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 3.5e-06 55.8 61 52.5
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 3.5e-06 55.8 66 45.5
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 3.5e-06 55.8 46 63.0
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 4.6e-06 55.5 64 46.9
Migut.N02602 Erythranthe guttata HOM05D004188 ORTHO05D004445 4.6e-06 55.5 58 55.2
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 4.6e-06 55.5 40 67.5
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 6.0e-06 55.1 61 52.5
A04p21570 Brassica napus HOM05D011190 ORTHO05D013686 6.0e-06 55.1 56 48.2
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 6.0e-06 55.1 48 56.2
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 7.9e-06 54.7 68 47.1


User provided reference genes

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