Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.6e-162 576.2 336 100.0
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 5.3e-150 534.6 331 89.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 7.4e-144 514.2 331 85.8
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.8e-142 509.6 329 85.7
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.5e-131 472.6 331 79.2
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 3.3e-128 462.2 335 76.7
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 7.4e-128 461.1 331 76.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.8e-127 458.4 336 76.8
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.8e-126 456.4 331 76.4
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 2.0e-125 453.0 330 75.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.6e-125 452.6 331 75.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 3.5e-125 452.2 321 76.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 5.9e-125 451.4 331 75.5
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 5.9e-125 451.4 331 73.7
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 7.7e-125 451.1 331 75.5
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.0e-124 450.7 331 74.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 8.5e-124 447.6 321 76.3
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 8.5e-124 447.6 331 73.4
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 2.5e-123 446.0 329 74.8
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.2e-123 445.3 323 74.0
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 3.6e-122 442.2 331 74.3
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.0e-121 440.7 332 73.8
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 5.2e-121 438.3 331 71.9
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 6.7e-121 438.0 331 72.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 8.8e-121 437.6 331 71.3
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 8.8e-121 437.6 331 73.1
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.0e-120 436.4 328 74.4
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 2.2e-119 433.0 331 71.0
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.8e-119 432.6 331 71.9
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 3.7e-119 432.2 331 72.8
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.7e-119 432.2 331 72.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 6.3e-119 431.4 331 72.8
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 6.3e-119 431.4 331 72.5
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 8.3e-119 431.0 331 74.0
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.1e-118 430.6 335 70.1
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-118 430.6 335 69.9
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.8e-118 429.9 335 73.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.4e-118 429.5 331 70.7
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.4e-118 429.5 331 72.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.1e-118 429.1 331 72.2
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.1e-118 428.7 331 72.2
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.6e-117 426.8 335 69.6
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 7.7e-117 424.5 331 71.6
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-116 423.7 330 70.6
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 3.2e-115 419.1 360 67.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.2e-115 419.1 335 68.1
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 9.4e-115 417.5 331 70.1
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 2.7e-114 416.0 321 72.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 3.6e-114 415.6 335 67.5
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.7e-114 415.2 319 72.4
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.1e-114 414.8 323 71.5
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 8.0e-114 414.5 331 70.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.3e-113 412.9 330 70.3
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 5.7e-112 408.3 328 72.0
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.8e-112 407.5 313 70.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.8e-111 406.0 331 67.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.8e-110 403.3 331 70.7
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 8.6e-108 394.4 331 65.3
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.5e-107 393.7 331 65.3
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.9e-107 393.3 334 65.9
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 9.5e-107 391.0 331 65.0
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.2e-106 390.6 331 64.4
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 4.7e-106 388.7 317 69.4
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-105 386.7 331 65.9
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 3.0e-105 386.0 334 65.0
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.0e-105 385.6 331 65.9
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 8.9e-105 384.4 331 65.6
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 4.1e-102 375.6 380 58.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 5.9e-101 371.7 331 67.1
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.3e-100 370.5 331 64.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 1.6e-98 363.6 331 63.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 3.6e-98 362.5 275 73.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.7e-98 362.1 331 62.5
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.7e-98 362.1 335 61.8
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-97 360.9 331 62.5
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 6.8e-97 358.2 331 64.4
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 8.9e-97 357.8 332 62.7
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.5e-96 357.1 331 65.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.4e-96 355.9 331 62.8
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 7.5e-96 354.8 279 68.5
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 6.4e-95 351.7 336 61.9
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.9e-94 350.1 327 59.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 3.2e-94 349.4 323 61.6
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.2e-94 349.4 331 61.3
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.0e-93 346.7 332 61.4
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.6e-93 345.5 331 61.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.0e-93 345.1 329 61.1
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.6e-92 341.7 330 59.1
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.6e-90 337.0 330 58.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.7e-90 335.5 331 59.5
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.7e-90 335.5 331 59.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.3e-89 333.2 330 58.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.2e-88 330.9 334 57.2
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.8e-88 328.6 324 58.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.9e-87 326.2 317 61.2
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 4.9e-87 325.5 328 55.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.1e-86 324.3 324 57.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.9e-86 323.6 331 58.3
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.0e-86 321.6 277 65.7
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.6e-85 318.9 336 58.0
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.0e-85 318.5 259 65.6
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.8e-85 318.2 331 56.2
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.3e-84 317.4 331 57.4
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.0e-84 316.2 338 56.5
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 7.3e-83 311.6 312 59.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.6e-82 310.5 280 64.6
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 4.7e-82 308.9 333 54.1
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.7e-82 308.9 330 54.5
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.6e-80 303.1 333 55.3
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.2e-79 300.1 333 54.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.4e-78 297.4 334 55.1
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.6e-77 293.9 332 60.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.1e-77 293.5 334 55.4
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.0e-76 291.2 339 53.7
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.3e-76 290.8 335 54.3
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.3e-76 290.0 338 55.0
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.5e-75 287.3 329 52.0
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.9e-75 287.0 336 55.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.9e-75 287.0 336 55.7
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.6e-74 283.9 325 54.8
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 3.1e-73 279.6 336 54.5
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 8.9e-73 278.1 316 55.1
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.6e-72 276.6 336 53.9
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 1.7e-71 273.9 331 52.3
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.9e-71 273.1 336 52.1
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 2.4e-70 270.0 328 57.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.2e-69 267.7 334 47.0
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.7e-69 266.5 288 57.3
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 6.6e-68 261.9 321 48.3
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.7e-68 261.5 324 50.9
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.3e-67 259.2 305 53.4
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.6e-67 258.8 329 50.5
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.3e-66 257.7 325 51.4
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 8.1e-66 255.0 329 51.1
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-64 250.8 286 53.5
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.8e-64 248.8 325 48.0
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.8e-64 248.8 324 50.9
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.7e-63 247.3 331 50.8
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 3.8e-63 246.1 248 60.9
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-61 240.4 285 54.0
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.0e-60 238.0 336 46.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.9e-60 236.1 284 53.2
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-59 234.6 331 49.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-59 234.6 296 51.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.3e-59 232.6 303 50.8
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-57 228.0 219 60.7
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.1e-57 226.5 312 47.4
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 5.4e-54 215.7 138 87.7
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.7e-53 213.4 321 45.2
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 3.5e-53 213.0 332 43.4
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.1e-50 203.8 337 37.7
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 3.1e-49 199.9 311 42.4
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 5.8e-48 195.7 281 47.7
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.9e-47 193.4 309 41.7
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 7.9e-45 185.3 290 41.0
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 4.3e-43 179.5 333 36.0
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.2e-40 171.4 131 71.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.8e-40 169.1 231 47.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 3.8e-39 166.4 185 51.4
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.4e-38 164.5 239 44.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.2e-38 162.9 141 68.8
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.1e-33 148.3 304 41.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.4e-33 147.1 176 50.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-29 134.8 317 36.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.1e-27 128.3 281 37.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.7e-23 114.4 139 52.5
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.0e-20 105.1 315 34.9
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 7.0e-17 92.4 281 33.8
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 7.0e-17 92.4 281 33.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 9.1e-17 92.0 111 57.7
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.7e-15 87.8 50 94.0
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.5e-15 85.9 55 81.8
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 7.2e-14 82.4 111 54.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.3e-07 61.6 116 45.7
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.7e-07 61.2 315 28.6
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 4.2e-06 56.6 109 41.3


User provided reference genes

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