Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G023632 Glycine max HOM05D003133 ORTHO05D003642 2.4e-68 261.9 124 100.0
Glyma.01G219900 Glycine max HOM05D003133 ORTHO05D003642 3.4e-62 241.5 118 97.5
Lalb_Chr09g0320991 Lupinus albus HOM05D003133 ORTHO05D003642 2.1e-56 222.2 118 89.8
Phvul.002G157600 Phaseolus vulgaris HOM05D003133 ORTHO05D003642 1.9e-52 209.1 118 84.7
Ca_24552_v3 Cicer arietinum L. HOM05D003133 ORTHO05D003642 2.7e-51 205.3 118 83.9
LjContig00312_ERROPOS870357g0003358 Lotus japonicus HOM05D003133 ORTHO05D003642 2.7e-51 205.3 120 81.7
Medtr5g010250 Medicago truncatula HOM05D003133 ORTHO05D003642 4.6e-51 204.5 118 82.2
Medtr5g010210 Medicago truncatula HOM05D003133 ORTHO05D003642 8.7e-50 200.3 119 80.7
TPR.G6641 Trifolium pratense HOM05D003133 ORTHO05D003642 2.2e-48 195.7 122 78.7
TWI15G0789 Tripterygium wilfordii HOM05D003133 ORTHO05D003642 2.2e-48 195.7 118 76.3
Lj2A192G38 Lonicera japonica HOM05D003133 ORTHO05D003642 6.3e-48 194.1 118 76.3
Nitab4.5_0003441g0130 Nicotiana tabacum HOM05D003133 ORTHO05D003642 1.1e-47 193.4 118 76.3
Phvul.002G289200 Phaseolus vulgaris HOM05D003133 ORTHO05D003642 1.1e-47 193.4 118 75.4
CsaV3_5G002830 Cucumis sativus L. HOM05D003133 ORTHO05D003642 1.4e-47 193.0 118 75.4
Sed0025899 Sechium edule HOM05D003133 ORTHO05D003642 1.4e-47 193.0 118 75.4
MSTRG.13837 Avicennia marina HOM05D003133 ORTHO05D003642 1.8e-47 192.6 118 74.6
CSS0043939 Camellia sinensis var. sinensis HOM05D003133 ORTHO05D003642 1.8e-47 192.6 118 75.4
CSS0049388 Camellia sinensis var. sinensis HOM05D003133 ORTHO05D003642 1.8e-47 192.6 118 75.4
Cc08_g14690 Coffea canephora HOM05D003133 ORTHO05D003642 1.8e-47 192.6 118 75.4
Dinv37643 Davidia involucrata HOM05D003133 ORTHO05D003642 1.8e-47 192.6 118 75.4
Thecc.03G278200 Theobroma cacao HOM05D003133 ORTHO05D003642 1.8e-47 192.6 118 74.6
COL.COLO4_34458 Corchorus olitorius HOM05D003133 ORTHO05D003642 2.4e-47 192.2 118 74.6
Prupe.5G099700 Prunus persica HOM05D003133 ORTHO05D003642 2.4e-47 192.2 118 74.6
GSVIVG01019757001 Vitis vinifera HOM05D003133 ORTHO05D003642 2.4e-47 192.2 118 74.6
Aa31LG6G5160 Aethionema arabicum HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
AT4G23100 Arabidopsis thaliana HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
BcaC09g51026 Brassica carinata HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
BcaNung00995 Brassica carinata HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
BcaNung01474 Brassica carinata HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
BcaNung03247 Brassica carinata HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
C01p17720 Brassica napus HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
BolC1t01707H Brassica oleracea HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
BolC7t45742H Brassica oleracea HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
Lj4g0013021 Lotus japonicus HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
Manes.02G022200 Manihot esculenta HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
Sp7g21160 Schrenkiella parvula HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 75.4
VMungo0251G3225 Vigna mungo HOM05D003133 ORTHO05D003642 3.1e-47 191.8 118 74.6
arahy.Tifrunner.gnm1.ann1.W25JQA Arachis hypogaea HOM05D003133 ORTHO05D003642 4.1e-47 191.4 118 74.6
arahy.Tifrunner.gnm1.ann1.WBB0SP Arachis hypogaea HOM05D003133 ORTHO05D003642 4.1e-47 191.4 118 74.6
ClCG01G002740 Citrullus lanatus HOM05D003133 ORTHO05D003642 4.1e-47 191.4 118 74.6
Ciclev10019696m.g Citrus clementina HOM05D003133 ORTHO05D003642 4.1e-47 191.4 118 75.4
Eucgr.D01848 Eucalyptus grandis HOM05D003133 ORTHO05D003642 4.1e-47 191.4 118 75.4
Glyma.05G207600 Glycine max HOM05D003133 ORTHO05D003642 4.1e-47 191.4 118 74.6
CAN.G774.27 Capsicum annuum HOM05D003133 ORTHO05D003642 5.3e-47 191.0 118 75.4
Nitab4.5_0010612g0020 Nicotiana tabacum HOM05D003133 ORTHO05D003642 5.3e-47 191.0 118 75.4
Peaxi162Scf00119g00083 Petunia axillaris HOM05D003133 ORTHO05D003642 5.3e-47 191.0 118 75.4
Sc22g0005610 Simmondsia chinensis HOM05D003133 ORTHO05D003642 5.3e-47 191.0 118 75.4
AL7G30380 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
A01p14400 Brassica napus HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
BraA01t01385Z Brassica rapa HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
Carub.0007s1815 Capsella rubella HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
Ca_17536_v3 Cicer arietinum L. HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
MELO3C005674.2 Cucumis melo HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
HanXRQChr17g0533681 Helianthus annuus HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 73.7
Medtr8g098350 Medicago truncatula HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
PGR031G1439 Punica granatum HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
Hund14791 Selenicereus undatus HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
Solyc08g081010.3 Solanum lycopersicum HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 75.4
Sopen08g029330 Solanum pennellii HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 75.4
TPR.G12862 Trifolium pratense HOM05D003133 ORTHO05D003642 6.9e-47 190.7 118 74.6
AUR62003405 Chenopodium quinoa HOM05D003133 ORTHO05D003642 9.0e-47 190.3 118 73.7
AUR62017210 Chenopodium quinoa HOM05D003133 ORTHO05D003642 9.0e-47 190.3 118 73.7
ECA246G1277 Erigeron canadensis HOM05D003133 ORTHO05D003642 9.0e-47 190.3 118 73.7
Ah.12g056970 Amaranthus hybridus HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 75.4
CANSAT21G0409 Cannabis sativa HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 74.6
FvH4_5g02350 Fragaria vesca HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 74.6
FAN04G0830 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 74.6
FAN08G3005 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 74.6
FAN13G1971 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 74.6
FAN18G2670 Fragaria x ananassa HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 74.6
MD14G1104000 Malus domestica HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 73.7
Oeu009160.2 Olea europaea HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 73.7
Potri.001G104500 Populus trichocarpa HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 73.7
Sabra01G0079200 Salix brachista HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 73.7
HPP92_015162 Vanilla planifolia HOM05D003133 ORTHO05D003642 1.2e-46 189.9 118 72.9
BcaB03g11757 Brassica carinata HOM05D003133 ORTHO05D003642 1.5e-46 189.5 118 74.6
Nn6g33441 Nelumbo nucifera HOM05D003133 ORTHO05D003642 1.5e-46 189.5 118 73.7
RcHm_v2.0_Chr7g0197771 Rosa chinensis HOM05D003133 ORTHO05D003642 1.5e-46 189.5 118 74.6
SHI07126 Sapria himalayana HOM05D003133 ORTHO05D003642 1.5e-46 189.5 118 73.7
PGSC0003DMG400012210 Solanum tuberosum HOM05D003133 ORTHO05D003642 1.5e-46 189.5 118 74.6
CARHR230180 Cardamine hirsuta HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 74.6
CiPaw.12G093500 Carya illinoinensis HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 73.7
Thhalv10024916m.g Eutrema salsugineum HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 74.6
Glyma.08G014300 Glycine max HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 73.7
Hma1.2p1_0792F.1_g218580 Hydrangea macrophylla HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 74.6
Lj8A232T62 Lonicera japonica HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 73.7
Lalb_Chr09g0333371 Lupinus albus HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 73.7
Nn1g01499 Nelumbo nucifera HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 73.7
SalBow8G3631 Salvia bowleyana HOM05D003133 ORTHO05D003642 2.0e-46 189.1 118 74.6
Oeu011047.1 Olea europaea HOM05D003133 ORTHO05D003642 2.6e-46 188.7 118 73.7
QL12p033200 Quercus lobata HOM05D003133 ORTHO05D003642 2.6e-46 188.7 118 73.7
Lalb_Chr05g0224791 Lupinus albus HOM05D003133 ORTHO05D003642 3.4e-46 188.3 118 73.7
TAR629G0119 Trochodendron aralioides HOM05D003133 ORTHO05D003642 3.4e-46 188.3 118 73.7
EL10Ac5g13059 Beta vulgaris HOM05D003133 ORTHO05D003642 4.5e-46 188.0 118 73.7
Lj8A228T23 Lonicera japonica HOM05D003133 ORTHO05D003642 4.5e-46 188.0 118 73.7
Aqoxy7G00341 Aquilegia oxysepala HOM05D003133 ORTHO05D003642 5.9e-46 187.6 118 72.0
Nn6g33461 Nelumbo nucifera HOM05D003133 ORTHO05D003642 5.9e-46 187.6 118 72.9
Potri.003G126900 Populus trichocarpa HOM05D003133 ORTHO05D003642 5.9e-46 187.6 118 73.7
SGA_v2.0_scaffold173G39193 Striga asiatica HOM05D003133 ORTHO05D003642 5.9e-46 187.6 118 73.7
A03p54030 Brassica napus HOM05D003133 ORTHO05D003642 7.7e-46 187.2 119 74.8
C07p52450 Brassica napus HOM05D003133 ORTHO05D003642 7.7e-46 187.2 119 74.8
BraA03t14471Z Brassica rapa HOM05D003133 ORTHO05D003642 7.7e-46 187.2 119 74.8
CiPaw.11G135600 Carya illinoinensis HOM05D003133 ORTHO05D003642 7.7e-46 187.2 117 74.4
Gohir.A09G192401 Gossypium hirsutum HOM05D003133 ORTHO05D003642 7.7e-46 187.2 118 74.6
Gohir.D09G186600 Gossypium hirsutum HOM05D003133 ORTHO05D003642 7.7e-46 187.2 118 74.6
Gorai.006G209400 Gossypium raimondii HOM05D003133 ORTHO05D003642 7.7e-46 187.2 118 74.6
MD06G1082500 Malus domestica HOM05D003133 ORTHO05D003642 7.7e-46 187.2 118 72.9
Lsat_1_v5_gn_1_34361 Lactuca sativa HOM05D003133 ORTHO05D003642 1.0e-45 186.8 118 73.7
Psat7g033480 Pisum sativum HOM05D003133 ORTHO05D003642 1.0e-45 186.8 118 72.9
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.0e-45 186.8 118 72.0
Cpa.g.sc74.44 Carica papaya HOM05D003133 ORTHO05D003642 1.3e-45 186.4 118 72.9
Duzib084G0978 Durio zibethinus HOM05D003133 ORTHO05D003642 1.7e-45 186.0 118 73.7
Zm00001eb264980 Zea mays HOM05D003133 ORTHO05D003642 1.7e-45 186.0 118 72.9
Haze_08845 Corylus avellana HOM05D003133 ORTHO05D003642 2.2e-45 185.7 118 72.0
Migut.A00769 Erythranthe guttata HOM05D003133 ORTHO05D003642 2.2e-45 185.7 118 72.0
Sabra03G0090000 Salix brachista HOM05D003133 ORTHO05D003642 2.2e-45 185.7 118 72.0
Zm00001eb354890 Zea mays HOM05D003133 ORTHO05D003642 2.2e-45 185.7 118 72.9
Cfa012177 Carpinus fangiana HOM05D003133 ORTHO05D003642 2.9e-45 185.3 118 72.0
Hund11475 Selenicereus undatus HOM05D003133 ORTHO05D003642 3.8e-45 184.9 118 71.2
PSO017G2538 Papaver somniferum HOM05D003133 ORTHO05D003642 6.5e-45 184.1 118 72.0
PSO063G0727 Papaver somniferum HOM05D003133 ORTHO05D003642 6.5e-45 184.1 118 72.0
THA.LOC104806388 Tarenaya hassleriana HOM05D003133 ORTHO05D003642 6.5e-45 184.1 118 72.0
VMungo1215G2488 Vigna mungo HOM05D003133 ORTHO05D003642 6.5e-45 184.1 118 77.1
Os05g0129000 Oryza sativa ssp. japonica HOM05D003133 ORTHO05D003642 8.5e-45 183.7 118 71.2
Os07g0462000 Oryza sativa ssp. japonica HOM05D003133 ORTHO05D003642 8.5e-45 183.7 118 71.2
THA.LOC104814473 Tarenaya hassleriana HOM05D003133 ORTHO05D003642 8.5e-45 183.7 118 72.0
SalBow7G4504 Salvia bowleyana HOM05D003133 ORTHO05D003642 1.4e-44 183.0 123 71.5
Rhsim02G0230000 Rhododendron simsii HOM05D003133 ORTHO05D003642 1.9e-44 182.6 130 67.7
Hma1.2p1_2966F.1_g330980 Hydrangea macrophylla HOM05D003133 ORTHO05D003642 3.2e-44 181.8 133 66.9
ATR0810G035 Amborella trichopoda HOM05D003133 ORTHO05D003642 1.6e-43 179.5 118 69.5
SMO353G0160 Selaginella moellendorffii HOM05D003133 ORTHO05D003642 1.6e-43 179.5 118 68.6
C03p84590 Brassica napus HOM05D003133 ORTHO05D003642 1.0e-42 176.8 118 71.2
BolC3t20748H Brassica oleracea HOM05D003133 ORTHO05D003642 1.0e-42 176.8 118 71.2
Manes.01G061500 Manihot esculenta HOM05D003133 ORTHO05D003642 1.8e-42 176.0 123 68.3
vmacro11331 Vaccinium macrocarpon HOM05D003133 ORTHO05D003642 2.3e-42 175.6 146 61.0
unitig_88.g27613 Utricularia gibba HOM05D003133 ORTHO05D003642 3.9e-42 174.9 107 73.8
Pp3c2_1270 Physcomitrium patens HOM05D003133 ORTHO05D003642 6.7e-42 174.1 118 66.1
AagrBONN_evm.TU.Sc2ySwM_228.1870 Anthoceros agrestis HOM05D003133 ORTHO05D003642 1.5e-41 172.9 117 66.7
Pp3c1_34800 Physcomitrium patens HOM05D003133 ORTHO05D003642 3.3e-41 171.8 118 65.3
Mapoly0043s0124 Marchantia polymorpha HOM05D003133 ORTHO05D003642 9.7e-41 170.2 118 63.6
Duzib068G0775 Durio zibethinus HOM05D003133 ORTHO05D003642 2.2e-40 169.1 118 66.9
DCAR_004633 Daucus carota HOM05D003133 ORTHO05D003642 3.7e-40 168.3 107 71.0
CBR_g17908 Chara braunii HOM05D003133 ORTHO05D003642 8.2e-40 167.2 119 63.0
Actinidia14558 Actinidia chinensis HOM05D003133 ORTHO05D003642 2.4e-39 165.6 105 71.4
Rhsim02G0230100 Rhododendron simsii HOM05D003133 ORTHO05D003642 2.0e-38 162.5 164 51.2
SMO143G0252 Selaginella moellendorffii HOM05D003133 ORTHO05D003642 5.9e-38 161.0 118 61.0
CARHR230170 Cardamine hirsuta HOM05D003133 ORTHO05D003642 7.7e-38 160.6 118 63.6
AL5G13020 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 1.7e-37 159.5 118 64.4
arahy.Tifrunner.gnm1.ann1.Y73929 Arachis hypogaea HOM05D003133 ORTHO05D003642 1.7e-37 159.5 139 61.2
Cfa012180 Carpinus fangiana HOM05D003133 ORTHO05D003642 1.7e-37 159.5 118 65.3
MCO14G076 Micromonas commoda HOM05D003133 ORTHO05D003642 1.7e-37 159.5 117 60.7
Atru.chr9.2197 Acer truncatum HOM05D003133 ORTHO05D003642 2.2e-37 159.1 127 60.6
Prupe.5G099600 Prunus persica HOM05D003133 ORTHO05D003642 2.9e-37 158.7 135 57.0
AL7G30390 Arabidopsis lyrata HOM05D003133 ORTHO05D003642 1.9e-36 156.0 118 61.9
Cfa012179 Carpinus fangiana HOM05D003133 ORTHO05D003642 2.5e-36 155.6 118 62.7
Carub.0007s2982 Capsella rubella HOM05D003133 ORTHO05D003642 3.2e-36 155.2 118 61.0
PRCOL_00004592 Prasinoderma coloniale HOM05D003133 ORTHO05D003642 7.2e-36 154.1 117 58.1
Haze_08840 Corylus avellana HOM05D003133 ORTHO05D003642 2.1e-35 152.5 118 61.9
Cre02.g077100 Chlamydomonas reinhardtii HOM05D003133 ORTHO05D003642 2.7e-35 152.1 118 54.2
Haze_08839 Corylus avellana HOM05D003133 ORTHO05D003642 7.9e-35 150.6 136 58.8
ATR0680G192 Amborella trichopoda HOM05D003133 ORTHO05D003642 6.7e-34 147.5 123 57.7
BcaNung03246 Brassica carinata HOM05D003133 ORTHO05D003642 1.1e-33 146.7 118 62.7
DCAR_004635 Daucus carota HOM05D003133 ORTHO05D003642 5.7e-33 144.4 120 56.7
C07p52420 Brassica napus HOM05D003133 ORTHO05D003642 7.4e-33 144.1 118 62.7
BolC7t45737H Brassica oleracea HOM05D003133 ORTHO05D003642 7.4e-33 144.1 118 62.7
A03p54020 Brassica napus HOM05D003133 ORTHO05D003642 3.7e-32 141.7 118 61.9
BraA03t14470Z Brassica rapa HOM05D003133 ORTHO05D003642 3.7e-32 141.7 118 61.9
Lsat_1_v5_gn_3_102360 Lactuca sativa HOM05D003133 ORTHO05D003642 5.3e-31 137.9 87 72.4
Lsat_1_v5_gn_6_660 Lactuca sativa HOM05D003133 ORTHO05D003642 9.1e-31 137.1 91 65.9
BolC7t45739H Brassica oleracea HOM05D003133 ORTHO05D003642 1.2e-30 136.7 118 61.0
Pp3c22_12540 Physcomitrium patens HOM05D003133 ORTHO05D003642 5.9e-30 134.4 121 49.6
BcaNung01476 Brassica carinata HOM05D003133 ORTHO05D003642 5.0e-29 131.3 123 58.5
MBI18_g34593_MAGBIO Magnolia biondii HOM05D003133 ORTHO05D003642 6.5e-29 131.0 107 61.7
Glyma.04G126801 Glycine max HOM05D003133 ORTHO05D003642 1.1e-28 130.2 65 92.3
BolC8t47455H Brassica oleracea HOM05D003133 ORTHO05D003642 1.0e-26 123.6 67 85.1
Lsat_1_v5_gn_8_94181 Lactuca sativa HOM05D003133 ORTHO05D003642 1.8e-26 122.9 91 65.9
MD07G1036400 Malus domestica HOM05D003133 ORTHO05D003642 6.7e-26 120.9 91 58.2
Haze_08841 Corylus avellana HOM05D003133 ORTHO05D003642 1.1e-25 120.2 128 49.2
HanXRQChr06g0165551 Helianthus annuus HOM05D003133 ORTHO05D003642 3.5e-22 108.6 84 60.7
CDE09G0774 Ceratophyllum demersum HOM05D003133 ORTHO05D003642 2.2e-21 105.9 72 65.3
Lsat_1_v5_gn_4_22300 Lactuca sativa HOM05D003133 ORTHO05D003642 5.5e-20 101.3 61 72.1
AUR62010673 Chenopodium quinoa HOM05D003133 ORTHO05D003642 3.0e-18 95.5 118 50.0
TWI81G0961 Tripterygium wilfordii HOM05D003133 ORTHO05D003642 2.2e-16 89.4 47 87.2
MD06G1082300 Malus domestica HOM05D003133 ORTHO05D003642 2.8e-16 89.0 74 52.7
SEGI_06273 Sequoiadendron giganteum HOM05D003133 ORTHO05D003642 1.2e-14 83.6 47 83.0
CDE11G0240 Ceratophyllum demersum HOM05D003133 ORTHO05D003642 1.6e-14 83.2 62 58.1
QL07p017350 Quercus lobata HOM05D003133 ORTHO05D003642 1.9e-12 76.3 64 51.6
Psat0s6286g0040 Pisum sativum HOM05D003133 ORTHO05D010373 4.7e-11 71.6 37 89.2


User provided reference genes

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