Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.1e-279 966.1 516 100.0
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.2e-209 733.4 538 79.0
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.8e-144 516.9 528 61.0
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.6e-143 511.9 538 62.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 7.5e-103 378.6 533 51.2
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 2.1e-97 360.5 598 45.8
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.2e-92 344.7 749 38.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.6e-91 339.0 541 47.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 1.6e-60 238.0 669 36.9
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 5.6e-58 229.6 680 36.3
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.2e-53 213.4 822 30.7
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 2.0e-47 194.5 494 35.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.1e-44 184.5 632 32.1
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.8e-44 182.6 561 33.9
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.3e-41 175.3 289 41.9
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 3.1e-40 170.6 622 31.7
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.1e-40 170.6 580 33.3
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.9e-40 169.5 578 33.4
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 9.9e-39 165.6 570 33.2
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.9e-38 163.3 279 41.6
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 6.2e-33 146.4 564 32.8
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.8e-32 144.8 268 40.3
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.4e-32 144.4 511 33.7
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 9.0e-32 142.5 214 43.5
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 5.8e-31 139.8 904 26.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 5.8e-31 139.8 476 33.2
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.0e-30 139.0 175 54.3
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.3e-30 138.7 284 42.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.7e-30 138.3 582 29.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.7e-30 138.3 330 35.8
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.7e-30 138.3 577 30.3
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.2e-30 137.9 573 32.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.9e-30 137.5 526 32.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 8.4e-30 136.0 574 29.4
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.9e-29 134.8 541 31.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 9.3e-29 132.5 587 29.3
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 3.0e-27 127.5 563 29.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 8.7e-27 125.9 317 36.9
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 8.7e-27 125.9 209 43.5
TPR.G14317 Trifolium pratense HOM05D004189 ORTHO05D017062 4.3e-26 123.6 638 27.4
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.7e-25 120.6 579 28.8
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.7e-25 120.6 539 29.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-24 118.6 610 29.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.4e-24 118.6 508 30.7
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 3.1e-24 117.5 317 34.1
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.0e-24 117.1 450 32.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 5.3e-24 116.7 417 32.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 9.0e-24 115.9 649 29.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.5e-23 115.2 508 29.3
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 4.2e-21 107.1 667 27.6
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.7e-20 104.4 375 30.1
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 4.6e-20 103.6 602 26.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.6e-20 103.6 406 31.8
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 6.1e-20 103.2 320 30.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.3e-19 102.1 353 30.3
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.8e-19 101.7 536 27.2
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.8e-19 101.7 474 28.9
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-19 100.9 550 27.3
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.0e-19 100.9 351 31.9
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 8.7e-19 99.4 499 29.7
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-18 98.6 151 45.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-18 98.2 602 27.1
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.5e-18 97.8 531 28.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.5e-18 97.8 527 26.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.5e-18 97.8 512 28.5
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 4.3e-18 97.1 345 31.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 5.7e-18 96.7 579 26.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.4e-18 96.3 591 25.9
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 7.4e-18 96.3 382 30.9
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.7e-17 94.0 414 29.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 3.7e-17 94.0 364 30.8
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.3e-17 93.2 368 29.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-16 92.4 597 27.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.4e-16 92.0 563 25.6
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-16 92.0 398 30.2
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.4e-16 91.3 425 28.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 4.1e-16 90.5 607 26.7
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.1e-16 90.5 451 29.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.1e-16 90.5 205 34.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 5.3e-16 90.1 591 27.4
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 6.9e-16 89.7 574 26.3
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 6.9e-16 89.7 574 26.3
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 9.0e-16 89.4 414 28.7
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 9.0e-16 89.4 177 37.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 9.0e-16 89.4 605 26.3
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.0e-15 88.2 169 39.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-15 87.8 598 27.3
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.5e-15 87.0 558 25.1
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 5.9e-15 86.7 572 26.4
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 5.9e-15 86.7 169 39.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 7.7e-15 86.3 572 26.0
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.7e-15 86.3 567 25.4
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.3e-14 85.5 544 27.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.3e-14 85.5 539 27.8
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.7e-14 85.1 588 27.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.2e-14 84.7 544 27.2
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-13 82.4 561 26.0
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.1e-13 82.4 464 25.4
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.4e-13 82.0 439 27.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.9e-13 81.6 525 24.8
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.9e-13 81.6 521 26.7
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.5e-13 81.3 479 28.4
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 3.2e-13 80.9 469 27.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 5.5e-13 80.1 463 26.1
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 7.2e-13 79.7 592 25.0
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 7.2e-13 79.7 239 33.9
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.6e-12 78.6 158 38.6
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.6e-12 78.6 449 28.7
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.7e-12 77.8 358 30.4
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.6e-12 77.4 263 31.2
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.6e-12 77.4 196 37.2
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 6.1e-12 76.6 158 38.0
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 7.9e-12 76.3 389 26.7
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.0e-11 75.9 394 27.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 2.3e-11 74.7 477 25.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.9e-11 73.9 413 29.3
Medtr1g100607 Medicago truncatula HOM05D004189 ORTHO05D004092 3.9e-11 73.9 124 45.2
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.1e-11 73.6 320 27.2
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 8.8e-11 72.8 294 31.3
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.3e-10 70.9 479 25.5
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 3.3e-10 70.9 495 27.5
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 4.3e-10 70.5 213 32.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 7.4e-10 69.7 147 40.1
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 7.4e-10 69.7 603 25.7
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 9.7e-10 69.3 482 25.7
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.3e-09 68.9 536 25.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.7e-09 68.6 170 37.1
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.2e-09 68.2 618 25.2
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 8.2e-09 66.2 84 45.2
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.2e-09 66.2 448 28.8
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 8.2e-09 66.2 545 25.9
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.8e-08 65.1 187 32.1
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.3e-08 63.5 198 31.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 9.1e-08 62.8 453 28.3
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.2e-07 62.4 503 27.2
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 2.6e-07 61.2 542 25.1
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 3.4e-07 60.8 530 26.0
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 7.7e-07 59.7 108 36.1
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 2.9e-06 57.8 288 29.2


User provided reference genes

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