Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 2063.5 976 100.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1954.9 975 93.9
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1840.9 964 89.4
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1834.7 965 89.5
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1805.0 978 86.2
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1780.4 974 85.6
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1777.3 971 85.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1775.4 971 85.5
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1770.0 972 85.9
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1706.4 964 82.5
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1698.7 975 80.9
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1694.5 972 81.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1686.8 973 81.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1683.7 965 81.0
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1681.4 977 81.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1679.1 968 80.2
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1678.3 981 80.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1673.7 981 80.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1669.8 971 80.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1655.6 982 79.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1650.6 972 79.7
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1648.6 967 79.0
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1646.3 981 78.9
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1644.8 967 79.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1637.5 982 78.7
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1637.1 976 79.1
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1630.5 964 78.3
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1626.3 973 78.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1625.9 966 77.7
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 955 79.0
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1622.8 973 78.3
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1621.3 967 77.9
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1618.6 968 77.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 963 78.0
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1608.2 964 76.9
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 985 77.2
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1605.5 972 76.6
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1604.7 966 77.6
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1603.2 964 77.6
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1600.5 972 77.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1600.1 963 77.4
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1593.9 968 76.4
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 968 76.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1588.5 971 76.6
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1585.5 976 76.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1584.3 968 76.4
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1580.1 969 76.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1577.8 968 75.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1577.0 971 76.3
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 968 75.7
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1570.8 972 75.6
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1564.7 979 75.6
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 966 75.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 979 75.3
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1562.0 982 74.5
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1562.0 972 75.4
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1560.0 967 74.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 966 74.2
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1555.4 970 74.9
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 965 74.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 955 76.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 968 75.1
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1547.3 977 74.3
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 972 74.6
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1545.0 973 74.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1539.6 975 74.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 966 73.6
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 966 73.5
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1526.9 965 73.3
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1524.2 972 73.4
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1520.4 967 72.5
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1520.0 960 74.4
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 971 72.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1518.1 968 73.1
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1514.6 968 72.5
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 969 73.2
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1508.0 928 76.1
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1501.1 968 72.5
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1493.4 965 72.3
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1493.4 964 72.8
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 964 72.4
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 971 72.0
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 968 71.1
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1484.9 941 74.6
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1482.6 968 72.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1479.5 970 72.1
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1475.7 963 71.7
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 964 72.7
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 971 70.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 964 70.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1459.9 955 71.7
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1452.6 971 69.4
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1450.6 967 70.1
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 964 71.1
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 991 70.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1434.1 986 69.4
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1418.7 876 75.0
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1417.5 872 75.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1416.4 971 69.5
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1414.1 975 68.9
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1413.7 969 69.2
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1409.4 967 69.5
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1403.7 970 69.1
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1401.0 969 68.8
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1397.1 972 69.1
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1396.3 970 68.5
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1394.8 842 76.8
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1394.0 984 67.7
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1393.6 972 68.6
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1388.2 971 68.5
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1388.2 971 68.5
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1387.1 762 83.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1385.5 968 68.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1380.2 968 68.6
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1380.2 851 75.1
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1377.5 969 68.4
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1370.5 970 67.6
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1347.8 1001 64.1
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1345.1 977 65.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1342.4 788 80.2
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1308.5 968 66.0
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1281.9 971 64.9
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1262.3 971 63.9
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1236.5 761 75.8
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1228.8 785 73.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1211.4 846 67.8
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1145.6 784 69.4
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.5e-309 1066.2 975 53.7
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.6e-303 1046.2 685 72.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.7e-302 1042.7 964 53.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.5e-282 974.9 965 51.7
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.0e-278 963.8 704 66.6
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.9e-273 944.9 969 49.1
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 2.3e-270 936.0 972 49.7
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 4.5e-250 868.6 564 72.5
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.4e-235 819.7 841 50.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.8e-197 692.2 402 76.6
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 5.7e-128 463.0 286 74.8
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 2.5e-123 447.6 411 57.9
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 4.8e-119 433.3 343 63.3
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.1e-110 405.6 373 57.4
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 2.4e-102 377.9 213 80.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.0e-89 335.9 186 82.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-86 324.7 273 60.1
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.8e-85 319.7 202 72.3
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.5e-75 288.9 159 81.8
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 7.3e-67 260.0 211 58.3
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 4.0e-65 254.2 143 79.0
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.3e-62 243.0 156 71.2
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.3e-60 239.2 637 28.9
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 3.8e-55 221.1 379 38.8
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.7e-45 188.3 147 63.9
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.9e-43 182.2 94 83.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 3.4e-40 171.4 150 57.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 5.8e-40 170.6 797 24.6
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 1.9e-35 155.6 150 52.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.3e-34 152.9 90 80.0
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.8e-34 151.8 157 49.7
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 7.9e-29 133.7 123 51.2
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 3.0e-28 131.7 92 67.4
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.9e-27 129.0 88 64.8
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 9.0e-25 120.2 118 51.7
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-24 118.6 183 38.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 2.2e-23 115.5 184 37.5
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.8e-18 98.6 128 43.8
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.1e-17 95.1 188 31.9
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 2.9e-15 88.6 114 45.6
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 6.7e-12 77.4 71 57.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.1e-11 76.6 46 69.6
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.8e-09 69.3 44 72.7
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.1e-09 68.2 76 47.4
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.3e-07 63.2 48 64.6
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.7e-07 62.8 44 65.9


User provided reference genes

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