Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 1.4e-156 556.2 276 100.0
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.3e-138 496.5 276 89.5
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 5.0e-138 494.6 279 89.2
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 3.1e-116 422.2 268 79.9
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 4.1e-116 421.8 285 76.1
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 9.2e-116 420.6 276 77.9
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 3.8e-114 415.2 281 73.7
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 6.6e-114 414.5 283 74.9
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 2.5e-113 412.5 284 72.2
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 1.2e-112 410.2 280 73.2
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.8e-112 409.1 254 78.3
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 4.7e-112 408.3 269 76.6
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.0e-111 407.1 254 78.0
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 1.8e-111 406.4 251 78.9
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 1.2e-110 403.7 258 76.7
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 3.4e-110 402.1 270 73.7
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 7.5e-110 401.0 254 77.2
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 9.8e-110 400.6 268 74.6
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 2.9e-109 399.1 251 77.7
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 2.4e-108 396.0 290 70.3
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 3.2e-108 395.6 253 75.1
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 2.0e-107 392.9 251 76.5
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 4.6e-107 391.7 245 80.0
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 6.0e-107 391.3 244 77.5
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.0e-106 390.6 267 71.9
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.3e-106 390.2 266 71.8
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.3e-106 390.2 254 75.6
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.7e-106 389.8 249 74.7
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 1.7e-106 389.8 282 69.9
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 2.3e-106 389.4 249 74.7
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 3.0e-106 389.0 245 79.6
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 3.0e-106 389.0 277 69.3
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 5.0e-106 388.3 277 69.0
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 6.6e-106 387.9 255 73.3
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 8.6e-106 387.5 255 73.7
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 2.5e-105 386.0 243 75.3
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 4.3e-105 385.2 246 74.4
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 7.3e-105 384.4 255 72.5
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 7.3e-105 384.4 246 74.8
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 7.3e-105 384.4 255 72.9
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.6e-104 383.3 268 72.0
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 6.2e-104 381.3 246 76.4
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 6.2e-104 381.3 260 73.8
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 8.0e-104 380.9 255 72.2
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.1e-103 380.6 282 70.6
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.4e-103 380.2 255 71.8
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.4e-103 380.2 254 76.0
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 1.4e-103 380.2 291 69.8
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.8e-103 379.8 256 73.4
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 4.0e-103 378.6 287 66.6
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 5.2e-103 378.3 255 71.4
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 8.9e-103 377.5 246 73.6
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 8.9e-103 377.5 277 69.7
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.2e-102 377.1 255 71.0
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 1.5e-102 376.7 282 69.9
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 1.5e-102 376.7 291 69.8
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 3.4e-102 375.6 258 70.9
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 5.8e-102 374.8 282 69.5
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 7.5e-102 374.4 260 73.8
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 9.8e-102 374.0 254 73.2
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 2.9e-101 372.5 255 71.4
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 1.1e-100 370.5 248 71.0
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 2.4e-100 369.4 267 68.9
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 4.1e-100 368.6 237 75.5
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 4.1e-100 368.6 247 71.7
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 9.2e-100 367.5 264 71.2
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 3.9e-98 362.1 283 67.1
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 3.9e-98 362.1 244 71.3
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 1.6e-96 356.7 274 65.7
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 3.6e-96 355.5 246 70.3
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 5.2e-95 351.7 249 67.9
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.6e-94 349.4 257 68.1
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.4e-94 349.0 235 73.2
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 3.4e-94 349.0 257 66.5
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 3.4e-94 349.0 260 65.8
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.3e-93 347.1 257 67.7
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 1.2e-91 340.5 266 64.7
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.2e-91 340.5 223 75.8
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 6.6e-90 334.7 248 69.4
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 6.6e-90 334.7 247 68.0
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 2.5e-89 332.8 255 65.1
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 7.3e-89 331.3 214 73.8
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 7.3e-89 331.3 249 67.9
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 9.5e-89 330.9 247 64.8
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 1.8e-87 326.6 251 66.9
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 2.4e-87 326.2 263 64.3
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 3.1e-87 325.9 253 65.2
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 4.0e-87 325.5 261 64.0
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 7.6e-86 321.2 245 64.9
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 3.8e-85 318.9 259 60.6
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 1.4e-84 317.0 253 64.8
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.4e-84 316.2 246 62.2
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 7.1e-84 314.7 276 57.2
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.3e-82 310.5 224 74.6
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 3.0e-74 282.7 237 59.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 2.9e-61 239.6 176 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 3.2e-60 236.1 266 46.2
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.5e-57 227.3 245 46.5
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 5.6e-57 225.3 258 46.9
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.6e-56 223.8 239 47.7
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 8.2e-56 221.5 163 66.9
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 8.4e-53 211.5 163 64.4
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.6e-51 207.2 162 64.8
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.5e-46 190.7 154 63.0
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 5.5e-44 182.2 266 39.5
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 4.6e-43 179.1 292 39.7
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 8.2e-40 168.3 249 41.8
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 1.5e-38 164.1 248 36.7
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 2.3e-34 150.2 102 71.6
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 7.7e-30 135.2 107 61.7
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 1.0e-29 134.8 162 49.4
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 4.4e-25 119.4 120 57.5
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.9e-20 104.0 71 66.2
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.2e-11 74.7 226 23.9
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.6e-11 74.3 228 24.1
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.2e-09 68.2 116 31.9
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 1.5e-09 67.8 184 24.5
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 3.4e-09 66.6 184 24.5
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 3.4e-09 66.6 234 23.9
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 4.4e-09 66.2 226 23.9
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 4.4e-09 66.2 105 31.4
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 4.4e-09 66.2 105 31.4
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 7.5e-09 65.5 105 31.4
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 7.5e-09 65.5 105 31.4
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.3e-08 64.7 105 30.5
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.3e-08 64.7 105 29.5
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.7e-08 64.3 234 21.8
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 2.2e-08 63.9 101 32.7
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 2.2e-08 63.9 101 32.7
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 2.2e-08 63.9 101 31.7
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 4.8e-08 62.8 225 24.0
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 8.3e-08 62.0 185 23.2
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 8.3e-08 62.0 105 28.6
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 1.4e-07 61.2 187 23.0
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 3.1e-07 60.1 115 28.7
THA.LOC104813736 Tarenaya hassleriana HOM05D006984 ORTHO05D008773 2.7e-06 57.0 133 30.1


User provided reference genes

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