Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G145666 Glycine max HOM05D006814 ORTHO05D008613 4.6e-52 207.6 104 100.0
Phvul.003G283200 Phaseolus vulgaris HOM05D006814 ORTHO05D008613 4.0e-32 141.4 73 91.8
arahy.Tifrunner.gnm1.ann1.DD0PLV Arachis hypogaea HOM05D006814 ORTHO05D008613 9.0e-32 140.2 73 89.0
arahy.Tifrunner.gnm1.ann1.S7AV19 Arachis hypogaea HOM05D006814 ORTHO05D008613 1.2e-31 139.8 73 87.7
Medtr8g447310 Medicago truncatula HOM05D006814 ORTHO05D008613 1.2e-31 139.8 73 89.0
Glyma.20G095300 Glycine max HOM05D006814 ORTHO05D008613 1.5e-31 139.4 73 90.4
TPR.G8183 Trifolium pratense HOM05D006814 ORTHO05D008613 1.5e-31 139.4 73 90.4
Lj3g0020867 Lotus japonicus HOM05D006814 ORTHO05D008613 2.0e-31 139.0 73 89.0
VMungo0251G2608 Vigna mungo HOM05D006814 ORTHO05D008613 3.4e-31 138.3 73 90.4
Ca_26271_v3 Cicer arietinum L. HOM05D006814 ORTHO05D008613 4.5e-31 137.9 73 89.0
Psat4g131760 Pisum sativum HOM05D006814 ORTHO05D008613 7.6e-31 137.1 73 89.0
Lalb_Chr05g0228761 Lupinus albus HOM05D006814 ORTHO05D008613 1.0e-30 136.7 73 89.0
COL.COLO4_16971 Corchorus olitorius HOM05D006814 ORTHO05D008613 1.3e-27 126.3 73 80.8
CiPaw.11G096600 Carya illinoinensis HOM05D006814 ORTHO05D008613 2.3e-27 125.6 73 80.8
CiPaw.11G097800 Carya illinoinensis HOM05D006814 ORTHO05D008613 2.3e-27 125.6 73 80.8
QL12p004459 Quercus lobata HOM05D006814 ORTHO05D008613 2.3e-27 125.6 73 79.5
GSVIVG01013112001 Vitis vinifera HOM05D006814 ORTHO05D008613 3.0e-27 125.2 73 80.8
Hma1.2p1_0586F.1_g183880 Hydrangea macrophylla HOM05D006814 ORTHO05D008613 5.1e-27 124.4 73 79.5
Manes.02G107600 Manihot esculenta HOM05D006814 ORTHO05D008613 5.1e-27 124.4 73 80.8
Thecc.03G307100 Theobroma cacao HOM05D006814 ORTHO05D008613 5.1e-27 124.4 73 79.5
Cfa012484 Carpinus fangiana HOM05D006814 ORTHO05D008613 6.7e-27 124.0 73 78.1
TAR629G1931 Trochodendron aralioides HOM05D006814 ORTHO05D008613 6.7e-27 124.0 73 78.1
Gohir.A08G154800 Gossypium hirsutum HOM05D006814 ORTHO05D008613 8.7e-27 123.6 73 78.1
Gohir.D08G175300 Gossypium hirsutum HOM05D006814 ORTHO05D008613 8.7e-27 123.6 73 78.1
Gorai.004G183200 Gossypium raimondii HOM05D006814 ORTHO05D008613 8.7e-27 123.6 73 78.1
Sed0016076 Sechium edule HOM05D006814 ORTHO05D008613 1.1e-26 123.2 73 78.1
Prupe.4G270400 Prunus persica HOM05D006814 ORTHO05D008613 1.5e-26 122.9 73 79.5
ClCG04G005520 Citrullus lanatus HOM05D006814 ORTHO05D008613 1.9e-26 122.5 73 76.7
Hund14354 Selenicereus undatus HOM05D006814 ORTHO05D008613 1.9e-26 122.5 73 78.1
Cpa.g.sc87.105 Carica papaya HOM05D006814 ORTHO05D008613 2.5e-26 122.1 73 79.5
Cc08_g03190 Coffea canephora HOM05D006814 ORTHO05D008613 2.5e-26 122.1 73 78.1
Lj8A305G45 Lonicera japonica HOM05D006814 ORTHO05D008613 2.5e-26 122.1 73 76.7
Atru.chr6.1626 Acer truncatum HOM05D006814 ORTHO05D008613 3.3e-26 121.7 73 76.7
AUR62018677 Chenopodium quinoa HOM05D006814 ORTHO05D008613 3.3e-26 121.7 73 78.1
DCAR_032083 Daucus carota HOM05D006814 ORTHO05D008613 3.3e-26 121.7 73 78.1
Nn1g02991 Nelumbo nucifera HOM05D006814 ORTHO05D008613 3.3e-26 121.7 73 75.3
CSS0047525 Camellia sinensis var. sinensis HOM05D006814 ORTHO05D008613 4.3e-26 121.3 73 78.1
AUR62007326 Chenopodium quinoa HOM05D006814 ORTHO05D008613 4.3e-26 121.3 73 78.1
MD11G1183600 Malus domestica HOM05D006814 ORTHO05D008613 4.3e-26 121.3 73 78.1
Aqoxy4G00304 Aquilegia oxysepala HOM05D006814 ORTHO05D008613 7.4e-26 120.6 73 75.3
MELO3C008839.2 Cucumis melo HOM05D006814 ORTHO05D008613 7.4e-26 120.6 73 75.3
CsaV3_4G012030 Cucumis sativus L. HOM05D006814 ORTHO05D008613 7.4e-26 120.6 73 75.3
Dinv28983 Davidia involucrata HOM05D006814 ORTHO05D008613 7.4e-26 120.6 73 78.1
FAN04G0609 Fragaria x ananassa HOM05D006814 ORTHO05D008613 9.6e-26 120.2 73 74.0
FAN08G0276 Fragaria x ananassa HOM05D006814 ORTHO05D008613 9.6e-26 120.2 73 74.0
FAN18G0582 Fragaria x ananassa HOM05D006814 ORTHO05D008613 9.6e-26 120.2 73 74.0
FAN18G2202 Fragaria x ananassa HOM05D006814 ORTHO05D008613 9.6e-26 120.2 73 74.0
RcHm_v2.0_Chr7g0211071 Rosa chinensis HOM05D006814 ORTHO05D008613 9.6e-26 120.2 73 74.0
TWI60G0232 Tripterygium wilfordii HOM05D006814 ORTHO05D008613 9.6e-26 120.2 73 76.7
Duzib205G0392 Durio zibethinus HOM05D006814 ORTHO05D008613 1.3e-25 119.8 73 78.1
EL10Ac5g12048 Beta vulgaris HOM05D006814 ORTHO05D008613 1.6e-25 119.4 74 77.0
Eucgr.D02215 Eucalyptus grandis HOM05D006814 ORTHO05D008613 1.6e-25 119.4 73 74.0
Peaxi162Scf00170g01111 Petunia axillaris HOM05D006814 ORTHO05D008613 1.6e-25 119.4 73 76.7
Sabra01G0108000 Salix brachista HOM05D006814 ORTHO05D008613 1.6e-25 119.4 73 76.7
FvH4_5g22650 Fragaria vesca HOM05D006814 ORTHO05D008613 2.1e-25 119.0 73 72.6
Potri.001G139100 Populus trichocarpa HOM05D006814 ORTHO05D008613 2.1e-25 119.0 73 76.7
Rhsim11G0018900 Rhododendron simsii HOM05D006814 ORTHO05D008613 2.1e-25 119.0 73 74.0
CANSAT21G0682 Cannabis sativa HOM05D006814 ORTHO05D008613 2.8e-25 118.6 73 72.6
MSTRG.24841 Avicennia marina HOM05D006814 ORTHO05D008613 3.7e-25 118.2 73 75.3
Solyc08g076610.4 Solanum lycopersicum HOM05D006814 ORTHO05D008613 4.8e-25 117.9 73 74.0
Sopen08g025160 Solanum pennellii HOM05D006814 ORTHO05D008613 4.8e-25 117.9 73 74.0
CAN.G298.54 Capsicum annuum HOM05D006814 ORTHO05D008613 6.2e-25 117.5 73 74.0
Ciclev10032236m.g Citrus clementina HOM05D006814 ORTHO05D008613 6.2e-25 117.5 73 75.3
Nitab4.5_0000685g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 6.2e-25 117.5 73 75.3
Sc07g0008590 Simmondsia chinensis HOM05D006814 ORTHO05D008613 6.2e-25 117.5 73 75.3
PGSC0003DMG400014801 Solanum tuberosum HOM05D006814 ORTHO05D008613 6.2e-25 117.5 73 74.0
Migut.A01081 Erythranthe guttata HOM05D006814 ORTHO05D008613 8.2e-25 117.1 73 76.7
Actinidia03355 Actinidia chinensis HOM05D006814 ORTHO05D008613 2.4e-24 115.5 73 72.6
HanXRQChr17g0538211 Helianthus annuus HOM05D006814 ORTHO05D008613 3.1e-24 115.2 73 71.2
HanXRQChr17g0538231 Helianthus annuus HOM05D006814 ORTHO05D008613 3.1e-24 115.2 73 71.2
Lsat_1_v5_gn_3_19041 Lactuca sativa HOM05D006814 ORTHO05D008613 4.1e-24 114.8 73 71.2
GSVIVG01003310001 Vitis vinifera HOM05D006814 ORTHO05D008613 6.9e-24 114.0 73 72.6
PSO063G6077 Papaver somniferum HOM05D006814 ORTHO05D008613 1.5e-23 112.8 73 68.5
CDE11G0551 Ceratophyllum demersum HOM05D006814 ORTHO05D008613 2.6e-23 112.1 73 72.6
PGR031G2224 Punica granatum HOM05D006814 ORTHO05D008613 2.6e-23 112.1 70 72.9
ECA246G4850 Erigeron canadensis HOM05D006814 ORTHO05D008613 3.4e-23 111.7 72 70.8
Carub.0007s2360 Capsella rubella HOM05D006814 ORTHO05D008613 4.5e-23 111.3 73 69.9
Aa31LG6G500 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.0e-22 110.2 73 68.5
Aa31LG9G8590 Aethionema arabicum HOM05D006814 ORTHO05D008613 1.0e-22 110.2 73 68.5
AL7G36810 Arabidopsis lyrata HOM05D006814 ORTHO05D008613 1.0e-22 110.2 73 68.5
AT4G17760 Arabidopsis thaliana HOM05D006814 ORTHO05D008613 2.9e-22 108.6 73 68.5
A03p50690 Brassica napus HOM05D006814 ORTHO05D008613 2.9e-22 108.6 73 69.9
Thhalv10025847m.g Eutrema salsugineum HOM05D006814 ORTHO05D008613 6.5e-22 107.5 73 67.1
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 6.5e-22 107.5 73 65.8
BcaC06g33591 Brassica carinata HOM05D006814 ORTHO05D008613 8.4e-22 107.1 73 68.5
BcaNung04035 Brassica carinata HOM05D006814 ORTHO05D008613 8.4e-22 107.1 73 68.5
C07p49120 Brassica napus HOM05D006814 ORTHO05D008613 8.4e-22 107.1 73 68.5
BolC7t45420H Brassica oleracea HOM05D006814 ORTHO05D008613 8.4e-22 107.1 73 68.5
BraA03t14161Z Brassica rapa HOM05D006814 ORTHO05D008613 8.4e-22 107.1 73 68.5
SGA_v2.0_scaffold36G14306 Striga asiatica HOM05D006814 ORTHO05D008613 8.4e-22 107.1 91 61.5
Sp7g16350 Schrenkiella parvula HOM05D006814 ORTHO05D008613 1.1e-21 106.7 73 68.5
CARHR224480 Cardamine hirsuta HOM05D006814 ORTHO05D008613 1.4e-21 106.3 73 67.1
Os06g0132600 Oryza sativa ssp. japonica HOM05D006814 ORTHO05D008613 1.9e-21 105.9 73 67.1
vmacro00308 Vaccinium macrocarpon HOM05D006814 ORTHO05D008613 1.9e-21 105.9 93 58.1
Haze_08181 Corylus avellana HOM05D006814 ORTHO05D008613 2.5e-21 105.5 60 76.7
Zm00001eb269700 Zea mays HOM05D006814 ORTHO05D008613 2.5e-21 105.5 73 64.4
THA.LOC104798334 Tarenaya hassleriana HOM05D006814 ORTHO05D008613 4.2e-21 104.8 73 65.8
ATR0772G225 Amborella trichopoda HOM05D006814 ORTHO05D008613 3.0e-19 98.6 73 67.1
SEGI_31198 Sequoiadendron giganteum HOM05D006814 ORTHO05D008613 8.7e-19 97.1 73 64.4
Oeu005300.2 Olea europaea HOM05D006814 ORTHO05D008613 7.4e-18 94.0 121 43.0
Pp3c10_20230 Physcomitrium patens HOM05D006814 ORTHO05D008613 4.1e-16 88.2 71 59.2
AagrBONN_evm.TU.Sc2ySwM_228.215 Anthoceros agrestis HOM05D006814 ORTHO05D008613 1.1e-13 80.1 64 59.4
CBR_g3124 Chara braunii HOM05D006814 ORTHO05D008613 1.2e-12 76.6 64 57.8
SMO358G0599 Selaginella moellendorffii HOM05D006814 ORTHO05D008613 2.1e-12 75.9 70 52.9
Mapoly0097s0033 Marchantia polymorpha HOM05D006814 ORTHO05D008613 1.8e-11 72.8 75 53.3
Nitab4.5_0025014g0010 Nicotiana tabacum HOM05D006814 ORTHO05D008613 8.8e-11 70.5 49 65.3
EL10As1g23070 Beta vulgaris HOM05D006814 ORTHO05D088401 1.8e-08 62.8 41 73.2


User provided reference genes

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