Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 1.6e-200 702.6 364 100.0
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 3.9e-183 644.8 364 93.1
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 2.2e-173 612.5 364 86.8
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 9.5e-153 543.9 371 78.2
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.1e-152 542.7 371 79.0
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 1.3e-149 533.5 371 79.5
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 1.7e-146 523.1 372 75.8
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 1.2e-144 516.9 375 75.7
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 2.4e-140 502.7 369 74.5
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 1.6e-131 473.4 349 73.9
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 4.6e-131 471.9 391 67.8
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 1.5e-129 466.8 375 70.4
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 4.3e-129 465.3 378 68.5
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 9.5e-129 464.2 362 71.3
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 4.7e-128 461.8 376 68.9
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 4.7e-128 461.8 377 67.6
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 3.1e-127 459.1 380 67.4
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 6.8e-127 458.0 385 68.1
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.3e-125 453.8 373 67.3
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 1.3e-125 453.8 379 66.8
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 4.9e-125 451.8 329 73.6
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 8.3e-125 451.1 379 66.5
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 1.6e-123 446.8 375 66.4
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 7.8e-123 444.5 383 64.5
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 7.8e-123 444.5 379 65.7
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 1.0e-122 444.1 381 65.9
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 1.7e-122 443.4 387 63.3
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 3.0e-122 442.6 388 64.7
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 8.6e-122 441.0 376 65.4
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 8.6e-122 441.0 360 67.5
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 1.5e-121 440.3 387 63.8
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 2.5e-121 439.5 369 65.0
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 4.3e-121 438.7 369 65.0
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 5.6e-121 438.3 369 65.0
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 2.8e-120 436.0 328 72.3
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 3.6e-120 435.6 378 63.8
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 3.6e-120 435.6 378 63.8
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 6.2e-120 434.9 322 73.6
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.4e-119 433.7 398 61.8
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.4e-119 433.7 375 64.8
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 1.8e-119 433.3 339 68.7
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 5.2e-119 431.8 389 63.2
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 8.9e-119 431.0 338 69.8
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 1.2e-118 430.6 324 71.9
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.2e-118 430.6 385 62.6
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.6e-118 427.9 378 65.3
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 9.9e-118 427.6 299 73.9
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 9.9e-118 427.6 387 63.0
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.3e-117 427.2 378 64.6
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 2.2e-117 426.4 379 63.6
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 3.8e-117 425.6 378 64.6
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 3.8e-117 425.6 378 64.6
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 4.9e-117 425.2 321 70.7
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 4.9e-117 425.2 346 67.9
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 4.9e-117 425.2 369 64.0
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 6.4e-117 424.9 254 83.9
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 8.4e-117 424.5 367 65.4
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 1.4e-116 423.7 369 63.4
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.9e-116 423.3 376 63.6
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 1.2e-115 420.6 267 80.1
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.6e-115 420.2 407 60.4
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 2.7e-115 419.5 375 64.0
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 6.0e-115 418.3 388 62.4
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 6.0e-115 418.3 376 64.1
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 7.8e-115 417.9 267 79.8
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 6.6e-114 414.8 367 64.3
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 6.6e-114 414.8 379 62.8
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 1.1e-113 414.1 387 61.5
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 1.9e-113 413.3 379 63.9
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.9e-113 413.3 330 67.9
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 2.5e-113 412.9 295 73.2
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 3.3e-113 412.5 336 66.7
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 7.3e-113 411.4 363 61.7
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 9.6e-113 411.0 510 52.0
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 2.1e-112 409.8 319 68.0
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 2.8e-112 409.5 272 77.2
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.8e-112 409.5 420 58.3
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.6e-112 409.1 259 79.9
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 6.2e-112 408.3 515 51.1
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 1.8e-111 406.8 340 66.5
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 9.0e-111 404.4 277 75.5
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 3.2e-108 396.0 247 81.0
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 5.1e-106 388.7 310 71.0
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 3.3e-105 386.0 324 64.8
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.3e-104 384.0 267 72.3
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 2.1e-104 383.3 368 61.1
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 2.1e-104 383.3 339 63.1
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 4.8e-104 382.1 320 63.4
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.4e-103 379.8 303 65.7
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.0e-102 376.7 322 62.7
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 3.4e-102 375.9 284 68.3
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.7e-101 373.6 296 66.6
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 5.4e-100 368.6 386 57.8
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 2.7e-99 366.3 286 66.8
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 2.7e-99 366.3 260 74.2
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 1.0e-98 364.4 311 65.0
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 1.1e-95 354.4 296 63.5
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 1.3e-93 347.4 392 54.1
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.7e-93 347.1 362 55.0
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.7e-93 347.1 300 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 3.5e-91 339.3 290 61.4
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 3.5e-91 339.3 356 57.0
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.0e-90 336.3 263 67.3
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 5.1e-90 335.5 297 63.6
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.8e-86 322.0 209 78.9
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 4.3e-81 305.8 341 55.7
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 6.5e-77 292.0 275 56.0
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 3.6e-75 286.2 263 57.4
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 3.9e-74 282.7 178 82.0
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 8.8e-74 281.6 414 47.1
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.4e-71 273.5 281 53.0
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 4.1e-71 272.7 389 47.8
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 1.7e-69 267.3 261 55.2
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 2.8e-64 250.0 187 67.4
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 1.1e-63 248.1 259 55.6
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 3.8e-61 239.6 157 76.4
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.5e-60 237.7 264 49.6
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 3.2e-52 209.9 130 82.3
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.7e-51 206.1 129 80.6
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 1.3e-45 188.0 115 85.2
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.7e-45 187.6 136 69.1
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.1e-39 166.8 108 77.8
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 7.7e-38 162.2 251 38.2
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 1.6e-27 127.9 176 43.8
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-24 117.9 187 37.4
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 7.0e-23 112.5 90 65.6
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.2e-22 111.7 82 73.2
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 2.5e-12 77.4 92 54.3
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 1.4e-10 71.6 114 43.9
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 8.9e-10 68.9 114 43.0
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 5.8e-09 66.2 36 91.7
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 9.9e-09 65.5 264 24.6
SEGI_18043 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 9.2e-07 58.9 58 51.7
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 2.1e-06 57.8 55 52.7


User provided reference genes

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