Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 2.8e-200 701.8 375 100.0
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 7.4e-185 650.6 376 94.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.2e-165 585.9 375 84.0
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 2.2e-160 569.3 359 85.0
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.5e-140 503.4 378 75.7
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 1.2e-123 447.2 398 64.6
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 4.4e-113 412.1 436 58.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.2e-110 404.1 382 64.4
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 2.1e-110 403.3 397 61.0
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 6.6e-109 398.3 375 65.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.1e-108 397.5 384 64.3
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.5e-108 396.4 393 62.6
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 6.4e-104 381.7 381 62.5
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.1e-98 364.4 371 61.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.3e-85 320.9 379 54.9
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 2.0e-81 307.0 392 51.3
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.5e-76 290.8 404 48.5
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 3.3e-76 289.7 414 48.6
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 5.7e-76 288.9 394 48.5
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 4.8e-75 285.8 384 49.0
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 6.2e-75 285.4 365 51.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 5.0e-72 275.8 395 47.8
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 7.9e-70 268.5 377 48.0
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.3e-69 266.9 384 47.1
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.1e-68 264.6 387 45.5
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 1.9e-68 263.8 372 46.8
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.9e-68 263.8 388 46.9
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 2.5e-68 263.5 369 45.5
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.3e-67 261.2 393 45.5
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 2.2e-67 260.4 414 44.4
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.8e-67 260.0 383 46.5
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 4.8e-67 259.2 419 44.4
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 4.1e-66 256.1 396 43.7
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 1.5e-65 254.2 376 45.5
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-64 251.1 389 44.7
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.3e-64 251.1 381 47.2
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.3e-64 251.1 269 57.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.9e-64 250.0 380 44.2
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 3.8e-64 249.6 400 46.2
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 5.0e-64 249.2 376 45.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 6.5e-64 248.8 418 42.3
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.5e-64 248.8 389 44.7
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 8.5e-64 248.4 389 45.2
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.5e-64 248.4 387 45.0
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.1e-63 248.1 378 44.2
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 1.9e-63 247.3 401 44.6
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.2e-63 246.1 393 44.3
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.2e-63 245.4 380 45.5
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.2e-62 244.6 394 44.2
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.1e-62 243.8 368 43.8
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.7e-62 243.4 399 43.9
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 3.6e-62 243.0 379 44.3
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 4.6e-62 242.7 395 45.1
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 4.6e-62 242.7 421 42.8
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 6.1e-62 242.3 386 43.0
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 6.1e-62 242.3 395 42.8
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 1.0e-61 241.5 400 44.5
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.4e-61 241.1 373 43.4
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.0e-61 240.0 392 42.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 3.0e-61 240.0 372 47.0
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 3.9e-61 239.6 411 42.6
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 3.9e-61 239.6 376 43.4
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.3e-60 236.5 379 44.9
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.3e-60 236.5 396 42.4
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 5.7e-60 235.7 388 44.1
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 9.7e-60 235.0 379 44.3
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.8e-59 232.6 379 43.3
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-58 231.5 380 43.9
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.8e-58 230.7 402 43.0
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.5e-57 227.6 411 41.4
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 5.9e-57 225.7 367 45.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 2.2e-56 223.8 405 42.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.2e-56 223.8 387 43.4
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.4e-55 221.1 389 44.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 5.5e-55 219.2 363 45.5
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.7e-54 216.9 390 45.6
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 3.6e-54 216.5 374 44.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.4e-53 214.5 373 43.4
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 3.0e-53 213.4 369 42.8
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 6.7e-53 212.2 319 46.1
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.3e-52 209.9 382 41.1
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.3e-51 208.0 397 43.8
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.3e-51 208.0 374 42.0
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 6.3e-51 205.7 332 44.9
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 6.3e-51 205.7 325 44.3
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 2.2e-48 197.2 375 41.9
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 2.2e-48 197.2 405 39.8
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.1e-47 194.9 403 38.2
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 3.2e-47 193.4 376 41.8
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 5.5e-47 192.6 390 40.3
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 7.2e-47 192.2 342 40.9
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 9.4e-47 191.8 322 42.9
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.3e-45 187.2 419 40.1
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 4.0e-45 186.4 418 41.1
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 5.2e-45 186.0 381 40.7
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 6.7e-45 185.7 388 41.2
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.3e-44 183.3 402 40.5
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 7.4e-44 182.2 399 40.6
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 9.7e-44 181.8 431 39.4
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 6.3e-43 179.1 385 40.8
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 6.3e-43 179.1 385 40.8
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.3e-43 179.1 374 40.6
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 1.4e-42 177.9 386 37.3
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.8e-42 177.6 383 42.8
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.8e-42 177.6 383 42.8
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.8e-42 177.6 383 42.8
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 2.4e-42 177.2 336 42.6
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.1e-42 176.8 399 40.6
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 7.0e-42 175.6 396 39.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.0e-41 174.1 416 39.9
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 2.0e-41 174.1 379 37.7
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 4.5e-41 172.9 410 39.5
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 1.9e-39 167.5 409 35.7
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 3.2e-39 166.8 172 57.6
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 1.2e-38 164.9 354 38.1
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-38 164.1 382 40.6
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-38 164.1 382 40.6
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.1e-38 164.1 382 40.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 1.4e-37 161.4 392 38.3
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 6.8e-37 159.1 336 39.9
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.4e-36 156.4 225 47.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.8e-35 153.7 346 41.0
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 6.3e-35 152.5 347 36.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.1e-34 151.8 403 35.2
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.1e-34 151.8 201 49.8
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.4e-34 151.4 397 37.0
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 1.8e-34 151.0 389 38.6
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 2.4e-34 150.6 389 40.1
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 2.4e-34 150.6 389 40.1
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 5.5e-31 139.4 389 34.2
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 9.4e-31 138.7 385 37.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.1e-30 136.0 406 36.0
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.3e-29 134.0 267 41.2
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.2e-28 131.7 371 34.5
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.6e-28 130.6 241 44.4
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.8e-27 127.1 414 34.5
Psat2g009520 Pisum sativum HOM05D005109 ORTHO05D006084 7.0e-18 95.9 90 57.8
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.7e-16 91.3 178 43.3
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.9e-16 90.5 226 39.4
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.0e-13 80.1 215 33.0
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 3.7e-11 73.6 353 27.8
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.7e-08 64.7 305 32.5
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 4.7e-06 56.6 251 28.3


User provided reference genes

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