Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 2.5e-253 878.2 436 100.0
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 2.8e-236 821.6 436 94.0
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.4e-219 766.1 436 87.6
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 3.1e-219 765.0 437 86.3
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 3.8e-217 758.1 437 86.5
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 2.6e-213 745.3 431 83.8
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 2.8e-212 741.9 432 84.7
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 1.1e-211 740.0 432 85.0
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 5.3e-211 737.6 438 82.6
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 1.9e-208 729.2 432 84.0
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 2.7e-207 725.3 432 82.6
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 1.1e-200 703.4 439 78.1
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 4.7e-199 698.0 437 77.6
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 7.5e-197 690.6 435 78.4
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 9.8e-197 690.3 437 77.3
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 3.7e-196 688.3 435 78.4
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.8e-195 686.0 440 75.7
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 2.4e-195 685.6 435 78.2
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 3.1e-195 685.3 434 77.6
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 4.1e-195 684.9 439 77.0
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 4.1e-195 684.9 435 77.2
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 9.2e-195 683.7 439 76.5
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 5.0e-193 677.9 435 77.7
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 3.3e-192 675.2 436 77.8
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.2e-191 673.3 438 75.3
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 2.1e-191 672.5 430 75.8
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 4.0e-190 668.3 434 76.3
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 8.9e-190 667.2 438 75.1
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 1.2e-189 666.8 441 75.1
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 2.0e-189 666.0 442 75.1
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 2.9e-188 662.1 438 74.0
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 1.9e-187 659.4 449 72.8
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 3.2e-187 658.7 440 74.1
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 4.1e-187 658.3 453 72.6
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 7.0e-187 657.5 459 71.9
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 1.2e-186 656.8 455 71.4
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.0e-186 656.0 441 73.9
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 2.0e-186 656.0 436 74.3
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 3.5e-186 655.2 435 74.7
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 6.0e-186 654.4 437 74.6
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 6.0e-186 654.4 437 74.6
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 7.8e-186 654.1 439 72.0
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 1.7e-185 652.9 484 68.0
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.7e-185 652.9 441 73.2
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 2.3e-185 652.5 447 72.0
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 6.6e-185 651.0 441 73.7
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 6.6e-185 651.0 441 73.7
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 1.1e-184 650.2 443 72.2
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 1.1e-184 650.2 430 73.0
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 1.5e-184 649.8 440 72.0
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 1.9e-184 649.4 442 74.4
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 1.9e-184 649.4 435 74.5
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 3.3e-184 648.7 434 74.7
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 9.5e-184 647.1 440 72.5
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 1.6e-183 646.4 431 72.9
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 2.8e-183 645.6 431 72.6
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 3.6e-183 645.2 432 77.1
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 1.4e-182 643.3 439 72.9
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 1.8e-182 642.9 442 71.5
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 2.3e-182 642.5 440 73.2
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 3.1e-182 642.1 431 72.4
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 8.9e-182 640.6 440 73.2
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 1.2e-181 640.2 430 72.6
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 1.2e-181 640.2 430 71.9
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 2.0e-181 639.4 440 70.7
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 2.9e-180 635.6 413 75.5
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 6.4e-180 634.4 446 70.6
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 6.4e-180 634.4 446 70.6
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 6.4e-180 634.4 468 68.8
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 6.4e-180 634.4 445 71.0
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.1e-179 633.6 441 71.2
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.9e-179 632.9 446 70.6
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 2.4e-179 632.5 445 70.8
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 2.4e-179 632.5 436 73.4
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 5.4e-179 631.3 430 70.5
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 1.6e-178 629.8 415 74.0
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 2.7e-178 629.0 432 70.1
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 2.7e-178 629.0 432 70.1
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 4.6e-178 628.2 436 72.2
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 6.0e-178 627.9 432 70.4
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 6.0e-178 627.9 432 70.4
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 7.8e-178 627.5 431 71.0
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.1e-176 623.6 458 68.6
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 1.1e-176 623.6 442 69.9
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 4.3e-176 621.7 438 68.9
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 2.1e-175 619.4 438 70.5
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 2.8e-175 619.0 431 70.1
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 1.8e-174 616.3 446 70.6
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 4.0e-174 615.1 467 66.0
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 5.2e-174 614.8 399 77.7
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 8.9e-174 614.0 444 66.9
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 5.8e-173 611.3 439 71.1
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 7.5e-173 610.9 437 68.6
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 2.9e-172 609.0 430 70.5
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 3.5e-170 602.1 431 68.0
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 7.8e-170 600.9 403 75.4
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 8.6e-169 597.4 464 65.1
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 4.2e-163 578.6 383 74.7
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 1.0e-161 573.9 398 71.1
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 1.3e-161 573.5 435 64.4
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 5.1e-161 571.6 435 64.6
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.1e-160 570.5 401 71.3
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 1.5e-160 570.1 450 66.4
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 1.1e-158 563.9 399 71.4
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 2.4e-158 562.8 437 67.3
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 1.4e-155 553.5 425 64.5
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 1.1e-152 543.9 439 64.5
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.3e-151 540.4 450 61.8
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 4.8e-151 538.5 429 62.7
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 1.6e-146 523.5 436 61.9
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 7.9e-130 468.0 430 56.3
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 6.7e-129 464.9 274 79.2
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 2.2e-127 459.9 307 75.6
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 1.1e-126 457.6 431 55.2
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 9.0e-126 454.5 435 53.8
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 2.6e-125 453.0 445 53.3
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 5.0e-124 448.7 277 74.4
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 2.0e-120 436.8 330 67.3
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 1.7e-116 423.7 359 57.9
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 2.2e-111 406.8 330 61.2
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 1.2e-109 401.0 391 53.5
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 8.5e-108 394.8 341 57.5
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 4.2e-107 392.5 409 51.8
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 7.7e-85 318.5 244 61.1
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 6.3e-79 298.9 182 77.5
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 2.8e-58 230.3 156 70.5
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 2.1e-53 214.2 430 34.0
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 2.1e-45 187.6 400 33.8
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 4.2e-22 110.2 102 54.9
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 8.2e-10 69.3 38 78.9
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 5.3e-09 66.6 223 25.1
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 6.9e-09 66.2 218 23.4
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 2.0e-08 64.7 205 26.3
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 2.6e-08 64.3 348 20.1
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.4e-08 63.9 348 22.1
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 5.9e-08 63.2 71 50.7
Lalb_Chr11g0073441 Lupinus albus HOM05D004669 ORTHO05D005767 2.2e-07 61.2 218 21.6
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 5.0e-07 60.1 218 21.6
CAN.G464.7 Capsicum annuum HOM05D001455 ORTHO05D001587 6.5e-07 59.7 69 43.5
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 8.5e-07 59.3 216 27.3
MELO3C030776.2 Cucumis melo HOM05D005813 ORTHO05D007310 8.5e-07 59.3 39 64.1
Solyc03g120080.4 Solanum lycopersicum HOM05D004669 ORTHO05D005767 8.5e-07 59.3 218 22.0
Sopen03g038950 Solanum pennellii HOM05D004669 ORTHO05D005767 8.5e-07 59.3 218 22.0
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 1.1e-06 58.9 218 21.6
ClCG06G013830 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
ClCG07G012820 Citrullus lanatus HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
MELO3C017903.2 Cucumis melo HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
CsaV3_4G001370 Cucumis sativus L. HOM05D004669 ORTHO05D005767 1.4e-06 58.5 218 22.5
Cre06.g254150 Chlamydomonas reinhardtii HOM05D004669 ORTHO05D005767 1.9e-06 58.2 218 22.0
Lj1g0022487 Lotus japonicus HOM05D000836 ORTHO05D000709 1.9e-06 58.2 193 25.4
Medtr1g050340 Medicago truncatula HOM05D000836 ORTHO05D000709 1.9e-06 58.2 216 23.6
Sed0027531 Sechium edule HOM05D004669 ORTHO05D005767 1.9e-06 58.2 223 23.8
PGSC0003DMG400005691 Solanum tuberosum HOM05D004669 ORTHO05D005767 2.5e-06 57.8 218 21.6
TPR.G7604 Trifolium pratense HOM05D000836 ORTHO05D000709 2.5e-06 57.8 216 23.6
Gorai.007G154000 Gossypium raimondii HOM05D000836 ORTHO05D000709 3.2e-06 57.4 202 25.7
Os03g0860900 Oryza sativa ssp. japonica HOM05D000836 ORTHO05D000709 3.2e-06 57.4 259 25.5
AT1G15440 Arabidopsis thaliana HOM05D004669 ORTHO05D005767 4.2e-06 57.0 218 22.5
BcaC07g38791 Brassica carinata HOM05D004669 ORTHO05D005767 4.2e-06 57.0 218 22.0
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 4.2e-06 57.0 218 22.0
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 4.2e-06 57.0 218 22.0
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 4.2e-06 57.0 250 22.8
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 4.2e-06 57.0 219 25.1
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 5.5e-06 56.6 178 25.8
VMungo0720G2087 Vigna mungo HOM05D000836 ORTHO05D000709 7.2e-06 56.2 193 23.8
Nitab4.5_0000671g0170 Nicotiana tabacum HOM05D004669 ORTHO05D005767 9.4e-06 55.8 218 21.1
Phvul.007G244700 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 9.4e-06 55.8 192 22.4


User provided reference genes

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