Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 4.2e-116 421.4 215 100.0
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 5.1e-114 414.5 215 97.7
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.7e-107 392.1 215 92.6
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 3.5e-107 391.7 216 92.1
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.1e-105 386.7 215 90.7
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.5e-105 386.3 214 91.6
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 1.3e-104 383.3 215 88.4
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.4e-103 379.8 215 88.4
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 3.1e-103 378.6 215 90.2
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 5.3e-103 377.9 215 86.5
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.2e-102 376.7 215 87.0
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 4.5e-102 374.8 215 86.5
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 1.3e-101 373.2 217 88.9
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 5.5e-100 367.9 216 88.0
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 6.1e-99 364.4 219 84.9
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 6.1e-99 364.4 221 86.0
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.9e-99 364.0 219 85.8
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.0e-98 363.6 218 84.4
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 1.0e-98 363.6 218 85.8
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.3e-98 362.5 219 84.0
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 3.0e-98 362.1 220 85.0
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 3.9e-98 361.7 219 84.9
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 6.7e-98 360.9 218 84.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 6.7e-98 360.9 219 84.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 6.7e-98 360.9 219 84.9
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.7e-98 360.9 219 84.9
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.7e-98 360.9 219 84.9
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.5e-97 359.8 219 84.0
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.5e-97 359.0 219 84.5
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.3e-97 358.6 220 84.5
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 1.3e-96 356.7 217 84.8
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.3e-96 356.7 217 84.8
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.3e-96 356.7 219 83.6
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 3.7e-96 355.1 218 82.6
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 4.8e-96 354.8 218 82.1
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 4.8e-96 354.8 220 80.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 4.8e-96 354.8 217 83.9
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 6.3e-96 354.4 219 83.6
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.3
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 81.7
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.8e-95 352.8 217 82.5
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 2.4e-95 352.4 218 82.6
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 2.4e-95 352.4 217 82.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 2.4e-95 352.4 219 81.7
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 82.5
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 82.5
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 3.1e-95 352.1 217 82.0
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 3.1e-95 352.1 218 83.5
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 4.1e-95 351.7 218 81.7
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 5.3e-95 351.3 215 82.3
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 5.3e-95 351.3 219 80.8
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 5.3e-95 351.3 230 79.1
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 9.1e-95 350.5 219 82.6
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.2e-94 350.1 215 81.9
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.2e-94 350.1 217 82.0
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 2.0e-94 349.4 219 81.3
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.6e-94 349.0 219 79.9
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 2.6e-94 349.0 217 82.0
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 3.4e-94 348.6 218 79.8
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 3.4e-94 348.6 217 81.6
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 3.4e-94 348.6 217 80.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 5.9e-94 347.8 217 82.9
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.9e-94 347.8 219 80.4
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 5.9e-94 347.8 218 80.7
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 1.7e-93 346.3 220 80.9
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.7e-93 346.3 219 80.8
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.2e-93 345.9 219 79.9
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 2.2e-93 345.9 217 79.7
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.2e-93 345.9 219 79.9
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.2e-93 345.9 219 79.9
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 2.2e-93 345.9 217 79.7
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.2e-93 345.9 218 79.8
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.9e-93 345.5 218 80.7
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 2.9e-93 345.5 221 80.5
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 2.9e-93 345.5 219 79.5
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 3.8e-93 345.1 219 80.4
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 3.8e-93 345.1 221 80.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 3.8e-93 345.1 217 80.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 5.0e-93 344.7 217 79.7
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 5.0e-93 344.7 217 79.7
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 6.5e-93 344.4 219 79.0
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 6.5e-93 344.4 217 81.1
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 6.5e-93 344.4 215 81.4
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 6.5e-93 344.4 217 79.3
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 8.5e-93 344.0 217 78.8
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 8.5e-93 344.0 215 82.8
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 80.4
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.5
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.9
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 1.1e-92 343.6 223 80.7
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.4e-92 343.2 219 79.5
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.4e-92 343.2 219 79.9
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 1.9e-92 342.8 222 81.1
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 1.9e-92 342.8 215 78.6
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.9e-92 342.8 217 80.2
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.5e-92 342.4 217 79.3
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 2.5e-92 342.4 213 79.8
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.5e-92 341.3 219 79.5
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 7.2e-92 340.9 216 80.1
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 7.2e-92 340.9 219 78.5
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 9.4e-92 340.5 216 80.6
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 9.4e-92 340.5 216 80.6
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-91 340.1 217 79.7
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.6e-91 339.7 214 79.9
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 2.1e-91 339.3 219 77.6
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 78.4
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.7e-91 339.0 218 78.4
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 4.7e-91 338.2 219 77.6
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 4.7e-91 338.2 215 81.4
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 7.9e-91 337.4 220 80.5
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 7.9e-91 337.4 220 80.5
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 2.3e-90 335.9 215 80.0
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.3e-90 335.9 216 81.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 3.0e-90 335.5 215 80.0
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 3.9e-90 335.1 220 78.6
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 6.7e-90 334.3 219 79.9
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 3.3e-89 332.0 218 78.0
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.1e-87 327.0 215 77.2
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.9e-85 318.9 213 76.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.6e-83 313.2 214 75.7
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 1.1e-81 307.0 219 73.1
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 2.6e-81 305.8 165 89.7
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 2.8e-80 302.4 175 82.9
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 6.5e-77 291.2 163 84.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.1e-76 290.4 190 76.3
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.4e-74 283.5 208 66.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.2e-72 276.2 165 82.4
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.1e-71 273.9 184 73.9
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.4e-71 273.5 172 75.6
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.1e-71 271.9 190 70.5
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 3.5e-70 268.9 169 76.3
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.6e-62 243.4 218 62.8
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 3.3e-60 235.7 188 64.9
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.4e-55 219.5 220 56.4
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 5.6e-52 208.4 218 56.0
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 2.4e-47 193.0 180 56.1
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.2e-46 190.7 195 52.8
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 1.0e-45 187.6 127 74.0
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.5e-44 183.0 134 73.1
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.8e-42 176.8 150 56.0
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 6.6e-29 131.7 107 70.1
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.9e-15 87.0 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.9e-15 87.0 59 72.9
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 8.4e-08 61.6 72 45.8


User provided reference genes

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