Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.2e-283 979.2 487 100.0
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.6e-254 881.7 490 89.8
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.7e-253 877.9 490 89.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.0e-250 869.8 487 90.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 9.8e-238 826.6 490 84.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 5.9e-235 817.4 491 83.7
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-234 815.8 492 84.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.7e-234 815.8 492 84.6
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 5.6e-233 810.8 490 83.3
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 8.3e-221 770.4 490 78.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 4.1e-220 768.1 490 78.2
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-215 752.7 501 75.8
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 9.2e-212 740.3 490 76.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 3.5e-211 738.4 463 79.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 2.1e-208 729.2 490 75.5
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.9e-204 716.1 462 77.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 3.6e-192 675.2 492 69.7
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.5e-190 669.8 501 68.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.6e-190 669.1 502 68.3
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.3e-189 666.8 492 68.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.2e-188 662.1 488 68.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.1e-187 659.4 490 68.8
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 6.0e-187 657.9 490 68.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 6.6e-186 654.4 492 67.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 8.7e-186 654.1 489 67.3
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 4.0e-183 645.2 491 67.2
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.5e-182 643.3 492 67.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.3e-181 640.2 494 67.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.3e-181 640.2 490 64.9
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.2e-180 635.6 494 66.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 7.1e-180 634.4 495 66.3
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.2e-179 633.6 490 66.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 6.0e-179 631.3 496 66.3
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.9e-179 630.9 492 64.2
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.9e-177 626.3 499 65.3
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.9e-177 626.3 492 64.8
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 2.1e-176 622.9 481 64.9
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.1e-176 620.9 492 64.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.4e-175 619.4 492 63.8
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.2e-174 617.1 481 64.4
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.6e-174 615.9 492 63.0
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 3.4e-174 615.5 493 64.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 5.8e-174 614.8 487 65.1
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.9e-173 612.5 492 63.4
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 6.5e-173 611.3 479 64.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.1e-171 606.3 451 66.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 2.7e-171 605.9 496 62.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.9e-165 585.9 558 57.0
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.0e-165 585.1 400 72.5
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 8.5e-165 584.3 489 60.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.4e-164 583.6 442 65.8
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.5e-164 582.8 743 46.7
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 9.3e-164 580.9 489 59.7
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.1e-163 579.7 475 62.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.1e-163 579.7 488 61.3
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 1.8e-162 576.6 497 60.8
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 3.0e-162 575.9 400 71.5
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.9e-162 575.5 462 61.5
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 8.7e-162 574.3 479 63.7
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.5e-161 573.5 489 59.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 7.4e-161 571.2 491 59.7
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-160 570.5 462 60.8
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.2e-160 569.7 439 64.2
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.8e-160 568.5 477 61.0
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.2e-158 563.9 499 58.3
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.9e-158 561.6 496 57.5
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 2.7e-155 552.7 407 67.3
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.7e-155 552.7 457 61.1
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.6e-155 552.4 498 56.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 1.8e-154 550.1 446 62.6
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.4e-153 544.7 499 56.3
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 9.7e-153 544.3 457 60.8
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.7e-152 542.3 493 58.4
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.1e-151 538.9 445 59.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.5e-150 537.0 399 66.9
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.3e-149 533.9 403 65.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.3e-149 533.9 550 53.1
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 3.8e-149 532.3 416 63.7
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.9e-148 530.0 530 53.4
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.2e-148 529.3 497 56.7
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.2e-147 527.3 515 55.9
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-147 526.9 496 55.2
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.7e-147 526.2 497 57.3
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 4.7e-147 525.4 484 56.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 7.9e-147 524.6 428 60.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.3e-146 523.1 477 56.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.9e-146 522.3 403 63.0
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.9e-146 522.3 427 62.3
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 6.7e-146 521.5 434 61.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 6.7e-146 521.5 492 55.7
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-145 520.4 497 55.1
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-145 520.4 427 62.1
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-145 520.4 418 62.4
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-145 520.4 397 64.2
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.5e-145 520.4 493 55.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.0e-145 520.0 431 59.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.0e-145 520.0 431 59.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-145 519.6 431 59.6
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.3e-145 519.2 426 60.6
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.4e-145 518.1 427 62.3
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 2.2e-144 516.5 403 62.8
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.8e-144 516.2 400 64.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.8e-144 515.4 493 55.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.8e-144 515.4 408 63.7
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 8.2e-144 514.6 488 56.8
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-143 513.5 431 59.2
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.3e-143 511.9 404 62.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 5.3e-143 511.9 407 63.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.1e-143 511.1 448 60.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.2e-142 510.8 483 55.9
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.6e-142 510.4 485 55.3
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.6e-142 510.4 407 63.1
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.6e-142 510.4 423 61.7
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.6e-142 509.6 407 61.9
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 2.6e-142 509.6 483 55.7
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.0e-141 507.7 504 55.6
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-141 507.3 491 55.2
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-141 506.5 522 52.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.2e-141 506.5 491 55.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 3.8e-141 505.8 496 54.8
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 5.0e-141 505.4 490 54.9
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 5.0e-141 505.4 490 54.9
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 5.0e-141 505.4 490 54.9
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 6.5e-141 505.0 505 54.1
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.5e-140 503.8 403 61.0
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.9e-140 503.4 486 55.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.5e-140 503.1 364 67.9
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 3.6e-139 499.2 554 51.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 6.1e-139 498.4 366 66.7
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 8.8e-138 494.6 411 61.1
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 2.8e-136 489.6 402 62.9
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 2.8e-136 489.6 466 55.8
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.3e-136 488.4 399 60.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 9.1e-135 484.6 410 59.5
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.2e-134 484.2 514 52.9
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 9.4e-132 474.6 460 54.8
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.2e-131 474.2 372 62.9
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.7e-131 472.2 613 46.0
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 5.4e-127 458.8 311 71.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.5e-126 456.1 318 72.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.4e-122 444.1 373 58.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 6.3e-120 435.3 401 54.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 5.4e-119 432.2 403 56.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.9e-116 423.7 401 52.1
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 4.0e-114 416.0 402 50.7
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 4.4e-105 386.0 373 51.2
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.3e-90 337.0 257 65.4
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-81 308.1 219 68.0
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.4e-81 306.2 254 60.6
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.4e-79 299.3 224 67.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 9.3e-79 298.5 270 55.6
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 1.7e-77 294.3 202 68.3
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.1e-71 272.3 227 60.8
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.4e-65 253.4 233 54.9
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.2e-63 246.5 309 44.7
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.5e-55 219.5 412 40.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 6.3e-51 206.1 273 41.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 6.9e-50 202.6 455 31.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 2.3e-37 161.0 122 68.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-37 161.0 157 54.8
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.7e-35 154.8 264 40.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 6.5e-32 142.9 207 42.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 8.5e-32 142.5 283 33.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.0e-28 131.3 97 67.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 6.3e-27 126.3 118 57.6
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-25 121.7 129 48.1
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.0e-25 121.3 640 22.3
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.5e-23 115.2 80 68.8
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 7.5e-20 102.8 112 50.9
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.9e-15 88.2 236 30.5
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.2e-12 79.0 60 58.3
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.8e-10 71.6 47 66.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 4.1e-10 70.5 346 24.3
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.9e-07 61.6 53 60.4


User provided reference genes

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