Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 5.6e-46 187.2 90 100.0
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.9e-22 109.0 82 70.7
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 2.6e-19 98.6 82 64.6
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.4e-19 98.2 66 74.2
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.4e-19 98.2 66 74.2
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 2.2e-18 95.5 69 73.9
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.4e-18 93.6 89 58.4
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 2.4e-17 92.0 72 72.2
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 4.2e-17 91.3 88 59.1
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 5.4e-17 90.9 87 57.5
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 7.1e-17 90.5 87 56.3
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 7.1e-17 90.5 87 56.3
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 7.1e-17 90.5 67 71.6
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.2e-16 89.7 84 59.5
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 2.1e-16 89.0 66 68.2
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 2.7e-16 88.6 66 68.2
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 2.7e-16 88.6 68 69.1
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.7e-16 88.6 67 67.2
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 3.5e-16 88.2 74 62.2
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 3.5e-16 88.2 84 56.0
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 4.6e-16 87.8 86 60.5
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 6.0e-16 87.4 87 54.0
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 6.0e-16 87.4 68 67.6
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.0e-15 86.7 84 56.0
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.3e-15 86.3 84 56.0
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.3e-15 85.5 69 65.2
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.0e-15 85.1 87 54.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 3.9e-15 84.7 87 52.9
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 6.6e-15 84.0 68 63.2
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 8.7e-15 83.6 84 56.0
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 8.7e-15 83.6 86 55.8
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 1.1e-14 83.2 74 60.8
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.3e-14 81.6 87 54.0
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 5.6e-14 80.9 87 54.0
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 7.3e-14 80.5 74 56.8
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.2e-13 79.7 68 63.2
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.6e-13 79.3 66 60.6
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.6e-13 79.3 73 58.9
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 2.8e-13 78.6 71 59.2
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 2.8e-13 78.6 73 56.2
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 3.6e-13 78.2 70 60.0
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 3.6e-13 78.2 75 56.0
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 3.6e-13 78.2 72 58.3
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 4.7e-13 77.8 71 60.6
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 6.2e-13 77.4 73 56.2
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 8.1e-13 77.0 71 60.6
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 8.1e-13 77.0 76 56.6
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 8.1e-13 77.0 79 51.9
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 1.4e-12 76.3 69 63.8
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.4e-12 76.3 90 52.2
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.8e-12 75.9 75 53.3
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 2.4e-12 75.5 79 49.4
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.4e-12 75.5 78 52.6
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 2.4e-12 75.5 75 54.7
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 4.0e-12 74.7 79 49.4
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 4.0e-12 74.7 79 49.4
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 4.0e-12 74.7 71 54.9
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 5.3e-12 74.3 71 59.2
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 5.3e-12 74.3 75 54.7
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 6.9e-12 73.9 61 59.0
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 6.9e-12 73.9 72 55.6
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 9.0e-12 73.6 81 50.6
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 9.0e-12 73.6 76 51.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 9.0e-12 73.6 81 50.6
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 9.0e-12 73.6 68 55.9
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 9.0e-12 73.6 89 47.2
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.5e-11 72.8 78 50.0
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 1.5e-11 72.8 70 57.1
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 1.5e-11 72.8 76 51.3
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.0e-11 72.4 90 48.9
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 2.0e-11 72.4 71 54.9
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 2.0e-11 72.4 70 54.3
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 2.0e-11 72.4 76 51.3
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 2.0e-11 72.4 71 54.9
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 2.0e-11 72.4 71 54.9
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 2.6e-11 72.0 61 59.0
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 2.6e-11 72.0 71 56.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 3.4e-11 71.6 71 54.9
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 3.4e-11 71.6 66 53.0
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.4e-11 71.6 96 42.7
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.4e-11 71.6 96 42.7
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 3.4e-11 71.6 71 56.3
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 7.6e-11 70.5 76 48.7
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 7.6e-11 70.5 71 54.9
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 7.6e-11 70.5 75 50.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 9.9e-11 70.1 73 50.7
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 9.9e-11 70.1 78 51.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 9.9e-11 70.1 63 52.4
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 9.9e-11 70.1 63 52.4
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 9.9e-11 70.1 77 49.4
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 1.3e-10 69.7 77 50.6
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.3e-10 69.7 63 50.8
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.7e-10 69.3 50 66.0
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.7e-10 69.3 50 66.0
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.7e-10 69.3 87 44.8
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.7e-10 69.3 70 55.7
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 2.2e-10 68.9 77 50.6
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.2e-10 68.9 89 47.2
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 2.9e-10 68.6 79 46.8
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 2.9e-10 68.6 79 46.8
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 2.9e-10 68.6 84 45.2
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.9e-10 68.6 73 49.3
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.8e-10 68.2 54 59.3
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 4.9e-10 67.8 61 52.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 4.9e-10 67.8 81 50.6
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 4.9e-10 67.8 66 53.0
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 6.4e-10 67.4 72 51.4
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.1e-09 66.6 86 46.5
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 1.1e-09 66.6 65 53.8
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.1e-09 66.6 81 45.7
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 1.1e-09 66.6 71 50.7
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.1e-09 66.6 63 47.6
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.4e-09 66.2 59 59.3
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.9e-09 65.9 66 48.5
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 1.9e-09 65.9 54 57.4
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.9e-09 65.9 54 57.4
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-09 65.1 83 48.2
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 3.2e-09 65.1 83 48.2
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 7.1e-09 63.9 65 52.3
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 9.3e-09 63.5 58 50.0
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.2e-08 63.2 74 47.3
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 1.6e-08 62.8 63 54.0
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.7e-08 62.0 69 49.3
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.7e-08 62.0 44 68.2
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.0e-07 60.1 81 44.4
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.3e-07 59.7 37 70.3
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 3.9e-07 58.2 60 45.0
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 3.3e-06 55.1 74 43.2
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 4.3e-06 54.7 75 42.7


User provided reference genes

Program Settings