Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 2.2e-91 339.0 177 100.0
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 9.5e-74 280.4 177 79.7
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 8.0e-73 277.3 176 80.1
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.1e-66 256.9 177 74.6
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 5.2e-64 248.1 176 71.6
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 1.5e-63 246.5 175 72.0
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 4.4e-63 245.0 180 72.2
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 2.9e-54 215.7 174 64.9
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 1.6e-49 199.9 177 62.1
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 2.1e-49 199.5 182 60.4
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 3.6e-49 198.7 179 59.2
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 1.8e-48 196.4 178 59.0
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.8e-48 196.4 177 58.8
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.8e-48 196.4 178 59.0
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 6.8e-48 194.5 180 60.0
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 3.4e-47 192.2 180 56.1
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 5.8e-47 191.4 175 57.1
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 7.6e-47 191.0 127 74.0
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 3.8e-46 188.7 178 57.9
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 6.4e-46 188.0 129 67.4
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.4e-45 186.8 160 62.5
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.4e-45 186.8 160 62.5
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 3.2e-45 185.7 127 69.3
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 4.2e-45 185.3 141 63.8
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.2e-44 183.7 126 72.2
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.1e-44 183.0 158 60.1
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 2.7e-44 182.6 179 58.7
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 3.5e-44 182.2 127 69.3
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 3.5e-44 182.2 127 71.7
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 7.8e-44 181.0 170 56.5
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 1.0e-43 180.6 126 67.5
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 1.3e-43 180.3 180 54.4
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.7e-43 179.9 178 53.9
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 2.3e-43 179.5 127 69.3
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 1.1e-42 177.2 129 69.8
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 1.9e-42 176.4 178 56.2
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 3.3e-42 175.6 193 50.8
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 3.3e-42 175.6 177 54.2
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 7.3e-42 174.5 169 56.2
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 9.6e-42 174.1 161 57.8
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 1.6e-41 173.3 170 54.1
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 2.1e-41 172.9 169 53.3
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 2.8e-41 172.6 176 52.8
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 6.2e-41 171.4 178 53.4
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 6.2e-41 171.4 162 53.7
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 8.1e-41 171.0 176 51.7
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 1.4e-40 170.2 177 53.1
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.4e-40 170.2 127 67.7
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 1.8e-40 169.9 175 50.9
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 5.3e-40 168.3 176 51.7
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 5.3e-40 168.3 174 53.4
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 6.9e-40 167.9 176 52.3
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 9.0e-40 167.5 169 54.4
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.2e-39 167.2 123 65.9
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 2.6e-39 166.0 171 50.9
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 4.4e-39 165.2 129 62.8
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 7.6e-39 164.5 188 53.7
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 2.9e-38 162.5 124 64.5
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 3.8e-38 162.2 168 51.8
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 6.4e-38 161.4 183 50.8
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 6.4e-38 161.4 177 49.2
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 6.4e-38 161.4 177 49.2
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 1.1e-37 160.6 124 63.7
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 1.4e-37 160.2 176 51.1
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 1.4e-37 160.2 159 54.7
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 5.4e-37 158.3 177 52.0
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 7.1e-37 157.9 177 50.8
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 7.1e-37 157.9 177 50.8
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 7.1e-37 157.9 181 50.8
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 7.1e-37 157.9 169 50.3
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 2.7e-36 156.0 99 76.8
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 2.7e-36 156.0 153 54.9
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 1.0e-35 154.1 174 50.6
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.0e-35 154.1 173 48.6
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 1.3e-35 153.7 170 48.8
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 3.9e-35 152.1 171 50.9
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 8.7e-35 151.0 161 55.3
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 1.1e-34 150.6 179 49.7
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 1.1e-34 150.6 100 72.0
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 4.3e-34 148.7 139 58.3
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.1e-33 146.4 132 59.8
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 2.6e-31 139.4 97 70.1
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 7.6e-31 137.9 124 54.0
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 9.9e-31 137.5 90 72.2
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 9.9e-31 137.5 175 47.4
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 2.2e-30 136.3 96 64.6
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 9.3e-29 131.0 99 59.6
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 1.2e-28 130.6 123 55.3
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 5.6e-26 121.7 98 60.2
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 4.8e-25 118.6 123 57.7
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 1.8e-24 116.7 111 59.5
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.6e-23 112.8 114 55.3
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 4.5e-23 112.1 154 49.4
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 2.1e-20 103.2 104 54.8
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 1.6e-17 93.6 98 55.1
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 3.7e-17 92.4 125 41.6
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 3.1e-16 89.4 62 69.4
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 3.4e-15 85.9 114 47.4
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 5.8e-15 85.1 120 43.3
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 2.1e-12 76.6 55 65.5
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 6.1e-12 75.1 127 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.0e-11 74.3 122 36.9
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 2.2e-06 56.6 75 40.0
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 2.2e-06 56.6 75 44.0
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 8.5e-06 54.7 75 41.3
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 8.5e-06 54.7 75 40.0
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 8.5e-06 54.7 66 40.9


User provided reference genes

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