Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 4.6e-230 800.8 390 100.0
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 9.7e-188 660.2 380 85.8
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.1e-180 636.7 373 84.5
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 1.7e-168 596.3 367 80.7
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 3.8e-160 568.5 378 75.7
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 3.6e-158 562.0 372 74.7
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.9e-151 539.7 376 69.7
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 1.6e-150 536.6 364 72.8
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 2.1e-150 536.2 375 71.7
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 1.4e-149 533.5 378 69.3
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 1.6e-142 510.0 360 70.3
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.5e-140 503.4 323 72.8
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.3e-139 500.4 353 70.8
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.2e-139 499.6 366 69.4
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 2.7e-137 492.7 302 77.2
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.1e-135 487.3 282 81.6
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 9.5e-135 484.2 330 70.6
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 6.2e-134 481.5 354 67.5
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 4.0e-133 478.8 336 68.5
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 2.0e-132 476.5 329 69.6
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 2.6e-132 476.1 381 65.6
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 2.6e-132 476.1 340 70.9
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 3.4e-132 475.7 347 66.9
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 2.9e-131 472.6 394 61.4
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 6.4e-131 471.5 363 65.3
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 6.4e-131 471.5 339 67.0
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 1.4e-130 470.3 348 65.5
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 2.4e-130 469.5 325 68.9
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 2.4e-130 469.5 345 65.5
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 9.2e-130 467.6 325 68.9
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 2.7e-129 466.1 353 64.3
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 3.9e-128 462.2 368 64.1
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 3.9e-128 462.2 339 66.7
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 8.6e-128 461.1 341 66.3
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.2e-126 457.2 324 66.7
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 1.6e-126 456.8 399 59.4
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.1e-126 456.4 358 63.4
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 2.8e-126 456.1 369 61.8
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 3.6e-126 455.7 364 62.4
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 3.6e-126 455.7 361 63.4
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 8.1e-126 454.5 380 60.8
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 8.1e-126 454.5 361 63.2
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 2.4e-125 453.0 372 61.3
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 5.2e-125 451.8 328 66.8
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.2e-124 450.7 374 61.2
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.5e-124 450.3 329 66.0
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.0e-124 449.9 385 60.8
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 4.4e-124 448.7 343 63.3
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 4.4e-124 448.7 360 63.1
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.9e-124 447.6 364 61.5
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.3e-123 447.2 354 62.4
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 1.7e-123 446.8 354 63.3
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 1.7e-123 446.8 330 66.1
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 4.9e-123 445.3 328 66.2
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 6.4e-123 444.9 333 62.5
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 6.4e-123 444.9 333 63.4
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 6.4e-123 444.9 369 62.9
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 1.1e-122 444.1 376 60.1
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 3.2e-122 442.6 336 64.0
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 3.2e-122 442.6 421 55.1
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.6e-121 440.3 333 63.1
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-121 439.9 341 64.2
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.1e-121 439.9 341 64.2
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 2.1e-121 439.9 332 64.8
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 7.8e-121 438.0 365 63.8
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.3e-120 437.2 333 65.2
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 5.1e-120 435.3 329 64.7
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 5.1e-120 435.3 342 60.8
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 6.6e-120 434.9 378 58.5
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 8.7e-120 434.5 350 62.9
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 1.1e-119 434.1 365 59.5
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 1.5e-119 433.7 373 61.1
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.9e-119 433.3 355 60.6
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.9e-119 433.3 322 65.5
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.3e-118 430.6 352 61.9
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.1e-118 429.9 364 59.6
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.8e-118 428.7 344 61.9
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 2.4e-117 426.4 341 60.7
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 6.9e-117 424.9 332 61.4
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 9.0e-117 424.5 325 62.8
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.6e-116 422.9 347 58.5
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 5.8e-116 421.8 332 63.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.7e-115 420.2 356 61.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 2.2e-115 419.9 392 57.7
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 3.8e-115 419.1 331 63.4
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 4.9e-115 418.7 331 62.2
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 2.4e-114 416.4 375 57.9
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 5.4e-114 415.2 283 68.2
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 1.2e-113 414.1 362 58.8
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 7.9e-113 411.4 367 60.2
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 5.1e-112 408.7 369 57.7
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 1.9e-111 406.8 280 68.6
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.3e-111 405.6 393 55.2
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 5.6e-111 405.2 351 59.5
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.1e-110 403.3 372 56.5
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 8.1e-110 401.4 352 57.4
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.4e-109 400.6 359 57.9
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.1e-109 399.4 272 69.1
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 9.0e-109 397.9 387 55.6
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 2.9e-107 392.9 350 58.9
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 1.3e-102 377.5 320 61.2
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.0e-99 367.9 368 51.9
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 9.3e-98 361.3 324 57.7
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 4.6e-97 359.0 349 53.6
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 6.7e-96 355.1 303 55.1
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 6.5e-91 338.6 359 49.9
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 3.5e-89 332.8 321 53.9
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.9e-87 327.0 365 53.2
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 2.0e-84 317.0 287 54.0
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 7.7e-84 315.1 352 49.7
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 1.4e-77 294.3 215 65.6
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 2.0e-76 290.4 300 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 4.8e-70 269.2 214 58.9
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 6.3e-70 268.9 253 56.9
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.7e-67 260.8 299 45.5
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 5.2e-64 249.2 279 49.8
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.8e-61 240.7 285 39.3
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 2.7e-60 236.9 295 43.1
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.2e-54 217.2 302 40.1
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 2.2e-46 190.7 129 69.8
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 7.0e-37 159.1 149 52.3
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.5e-31 141.4 196 39.8
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 4.9e-30 136.3 90 68.9
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 2.4e-29 134.0 85 71.8
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.1e-24 118.6 69 69.6
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 1.1e-10 72.0 93 45.2
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.5e-10 71.6 70 52.9
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 1.9e-10 71.2 42 73.8


User provided reference genes

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