Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.3e-179 632.9 305 100.0
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.9e-115 419.1 300 72.0
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 1.2e-113 413.7 303 70.6
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 2.3e-112 409.5 302 69.5
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 5.2e-112 408.3 307 68.7
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 5.7e-111 404.8 303 69.0
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 3.7e-110 402.1 304 69.1
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 3.2e-109 399.1 302 67.2
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 2.7e-108 396.0 303 66.7
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.5e-108 395.6 303 66.7
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 4.6e-108 395.2 303 66.3
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 7.8e-108 394.4 313 67.1
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 3.0e-107 392.5 302 65.9
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 6.6e-107 391.3 300 65.7
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 7.3e-106 387.9 309 64.4
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 2.8e-105 386.0 300 66.0
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 3.6e-105 385.6 303 64.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 4.7e-105 385.2 303 64.7
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 1.0e-104 384.0 298 64.4
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.8e-104 383.3 303 64.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 2.3e-104 382.9 303 64.7
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.3e-104 382.9 303 64.4
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 6.8e-104 381.3 303 63.7
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 1.2e-103 380.6 304 64.5
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.5e-103 380.2 299 64.5
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 2.6e-103 379.4 332 60.2
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 1.3e-102 377.1 303 63.7
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.3e-102 377.1 302 62.6
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 2.2e-102 376.3 303 63.4
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.7e-102 375.6 303 64.0
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 6.4e-102 374.8 303 63.7
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 8.3e-102 374.4 300 64.0
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 8.3e-102 374.4 302 62.9
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.1e-101 374.0 300 63.7
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.4e-101 373.6 300 63.7
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.9e-101 373.2 303 62.7
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 1.9e-101 373.2 300 63.7
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 5.4e-101 371.7 302 62.3
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 7.8e-100 367.9 300 62.7
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 1.0e-99 367.5 300 62.3
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 1.0e-99 367.5 302 61.6
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.5e-98 363.6 296 62.2
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 2.5e-98 362.8 301 62.1
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 5.6e-98 361.7 300 61.3
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 2.1e-97 359.8 299 62.9
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 2.1e-97 359.8 299 61.5
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 6.2e-97 358.2 299 61.5
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 8.1e-97 357.8 309 61.5
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 1.4e-96 357.1 315 60.3
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 2.3e-96 356.3 304 63.5
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.2e-95 354.0 303 61.7
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.2e-95 354.0 298 60.7
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 2.0e-95 353.2 309 60.5
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.0e-95 353.2 308 58.8
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.6e-95 352.8 309 61.2
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 1.3e-94 350.5 309 58.6
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 2.2e-94 349.7 303 60.1
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 3.7e-94 349.0 278 62.6
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.9e-93 346.7 315 59.0
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 1.9e-93 346.7 315 59.0
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.9e-93 346.7 315 59.0
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 5.4e-93 345.1 316 55.7
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 7.1e-93 344.7 315 59.0
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 9.2e-93 344.4 305 60.0
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 2.1e-92 343.2 315 58.7
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.0e-91 340.9 309 57.3
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.3e-91 340.5 300 58.0
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.7e-91 340.1 308 58.1
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.7e-91 340.1 316 58.9
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 3.0e-91 339.3 298 58.1
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 3.0e-91 339.3 303 59.1
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 5.1e-91 338.6 300 57.0
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 5.1e-91 338.6 300 59.7
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.9e-90 336.7 300 56.7
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 3.3e-90 335.9 308 57.1
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 5.6e-90 335.1 300 55.3
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 5.6e-90 335.1 256 66.8
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 2.1e-89 333.2 300 58.0
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 3.6e-89 332.4 299 57.5
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 3.6e-89 332.4 300 58.0
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 3.6e-89 332.4 300 56.0
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.4e-88 330.5 254 66.1
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 2.2e-86 323.2 299 55.9
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 4.9e-86 322.0 299 54.8
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.7e-83 313.5 300 58.0
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 7.3e-82 308.1 317 49.5
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.1e-80 304.3 300 50.7
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 3.1e-80 302.8 273 58.6
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.1e-80 302.8 275 57.8
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 1.5e-74 283.9 295 48.1
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.9e-74 283.5 316 46.2
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 1.6e-73 280.4 295 46.4
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 1.6e-73 280.4 269 55.0
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 2.8e-73 279.6 242 59.9
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 2.8e-73 279.6 245 60.0
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 2.3e-67 260.0 334 47.0
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.4e-64 250.8 273 50.9
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 7.9e-60 235.0 274 48.2
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 3.0e-51 206.5 323 43.7
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.9e-50 203.8 347 40.3
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 4.3e-50 202.6 295 42.4
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.6e-44 184.1 202 49.5
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.5e-42 176.8 229 47.6
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 9.7e-42 174.9 144 59.0
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.7e-33 147.5 229 36.7
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.5e-31 141.0 296 32.1
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 1.3e-30 137.9 311 30.9
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.0e-27 128.3 86 72.1
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.8e-24 117.5 95 61.1
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 4.1e-08 63.2 31 83.9
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 4.1e-08 63.2 31 83.9
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 4.1e-08 63.2 31 83.9
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 4.1e-08 63.2 31 83.9
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 1.2e-07 61.6 31 80.6
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.3e-06 58.2 48 64.6


User provided reference genes

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