Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 6.3e-76 287.3 143 100.0
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 1.0e-46 190.3 165 63.6
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.8e-46 189.5 165 63.6
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 4.0e-46 188.3 165 62.4
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 4.0e-46 188.3 165 62.4
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 4.4e-45 184.9 165 61.8
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 7.5e-45 184.1 165 61.2
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 9.8e-45 183.7 165 61.2
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 4.8e-44 181.4 165 60.0
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 5.4e-43 177.9 165 58.8
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.3e-41 173.3 163 58.3
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 5.0e-41 171.4 172 58.1
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 8.6e-41 170.6 164 56.7
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 1.9e-40 169.5 161 58.4
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 1.9e-40 169.5 164 56.1
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 2.5e-40 169.1 161 57.1
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 5.5e-40 167.9 164 56.1
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 7.2e-40 167.5 164 55.5
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 9.5e-40 167.2 163 56.4
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.6e-39 166.4 164 54.3
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 3.6e-39 165.2 163 55.8
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 3.6e-39 165.2 164 54.3
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 4.7e-39 164.9 163 54.0
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 6.1e-39 164.5 162 54.9
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 8.0e-39 164.1 163 53.4
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 8.0e-39 164.1 161 55.3
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 1.0e-38 163.7 162 54.3
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.0e-38 163.7 162 55.6
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.4e-38 163.3 162 54.3
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 1.8e-38 162.9 164 53.0
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.3e-38 162.5 164 53.0
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 3.0e-38 162.2 164 55.5
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 5.2e-38 161.4 164 53.0
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 5.2e-38 161.4 161 55.3
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 6.8e-38 161.0 164 53.7
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 6.8e-38 161.0 164 53.7
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 6.8e-38 161.0 165 53.9
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 8.9e-38 160.6 164 52.4
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.5e-37 159.8 164 53.7
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 2.0e-37 159.5 164 53.7
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.0e-37 159.5 164 53.0
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 3.4e-37 158.7 164 53.0
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 4.4e-37 158.3 164 52.4
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 4.4e-37 158.3 164 52.4
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 4.4e-37 158.3 164 52.4
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 4.4e-37 158.3 164 52.4
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 4.4e-37 158.3 164 52.4
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 4.4e-37 158.3 163 52.8
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 4.4e-37 158.3 161 54.7
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 4.4e-37 158.3 161 54.0
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 5.7e-37 157.9 163 52.8
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 7.5e-37 157.5 164 51.8
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 7.5e-37 157.5 164 50.6
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 9.8e-37 157.1 143 60.1
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.3e-36 156.8 164 51.8
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.3e-36 156.8 163 52.1
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.7e-36 156.4 163 51.5
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 1.7e-36 156.4 164 50.6
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 2.2e-36 156.0 162 52.5
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 2.2e-36 156.0 163 53.4
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 2.8e-36 155.6 162 53.1
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 2.8e-36 155.6 163 50.9
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 3.7e-36 155.2 164 51.2
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 3.7e-36 155.2 161 52.8
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.7e-36 155.2 184 47.8
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 4.9e-36 154.8 163 50.9
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 4.9e-36 154.8 164 51.2
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 6.3e-36 154.5 175 50.3
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 1.8e-35 152.9 163 50.3
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.8e-35 152.9 164 50.0
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 1.8e-35 152.9 163 52.1
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 2.4e-35 152.5 164 50.6
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.4e-35 151.4 193 45.6
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 9.2e-35 150.6 163 52.1
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 1.6e-34 149.8 184 49.5
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.0e-34 149.4 163 51.5
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.5e-34 148.7 164 48.2
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 1.0e-33 147.1 194 44.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 1.7e-33 146.4 173 46.8
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.3e-33 146.0 187 44.9
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 5.0e-33 144.8 164 49.4
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 6.6e-33 144.4 166 47.6
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 8.6e-33 144.1 163 49.7
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 8.6e-33 144.1 163 50.3
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.5e-32 143.3 163 49.1
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 2.5e-32 142.5 165 51.5
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 5.6e-32 141.4 163 47.9
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 1.2e-31 140.2 206 43.7
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.4e-30 136.7 116 61.2
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 2.0e-29 132.9 164 42.7
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 4.9e-28 128.3 112 60.7
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.4e-27 126.7 163 44.8
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.4e-27 125.9 148 51.4
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.0e-25 120.6 137 50.4
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.3e-25 120.2 114 56.1
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.0e-25 119.0 114 55.3
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 3.9e-25 118.6 164 44.5
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 5.0e-25 118.2 165 43.0
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 8.6e-25 117.5 166 42.8
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.5e-24 115.9 112 53.6
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 6.2e-23 111.3 152 44.7
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 3.1e-22 109.0 121 52.1
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 3.1e-22 109.0 166 39.2
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 5.8e-21 104.8 139 43.9
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.7e-20 103.2 108 49.1
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 2.2e-20 102.8 112 50.0
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.1e-19 100.5 67 70.1
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.4e-19 100.1 96 53.1
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.4e-19 100.1 96 53.1
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 2.1e-18 96.3 163 35.0
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 1.3e-17 93.6 166 34.3
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 6.6e-17 91.3 58 72.4
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.8e-15 85.9 82 57.3
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 2.3e-14 82.8 71 53.5
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 2.6e-13 79.3 72 56.9
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 4.4e-13 78.6 154 34.4
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 5.4e-11 71.6 87 50.6
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 1.3e-09 67.0 44 65.9
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 6.6e-09 64.7 118 37.3


User provided reference genes

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