Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.4e-239 831.2 419 100.0
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.5e-226 789.3 419 94.5
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 8.5e-190 667.2 422 79.1
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.8e-185 652.1 423 78.5
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 1.6e-167 593.2 413 73.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 6.6e-166 587.8 413 72.6
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.6e-159 566.6 427 68.4
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 2.0e-159 566.2 426 69.7
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.6e-146 522.7 426 64.8
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.7e-145 520.0 426 64.3
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 6.4e-145 518.1 402 68.4
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.5e-143 512.3 426 64.1
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 5.8e-138 495.0 406 62.6
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 7.1e-136 488.0 428 63.1
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 3.0e-134 482.6 406 62.6
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 1.2e-127 460.7 410 58.5
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.5e-125 453.8 415 56.9
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 4.8e-124 448.7 352 67.0
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.3e-121 440.7 451 52.5
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.7e-121 440.3 417 55.4
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 2.2e-121 439.9 408 56.9
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.1e-120 437.6 473 50.3
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 1.4e-120 437.2 409 56.0
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.4e-120 436.4 410 56.6
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.2e-120 436.0 409 56.0
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-119 433.7 420 56.0
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-119 433.7 412 55.3
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.1e-119 433.3 304 72.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 2.1e-119 433.3 401 57.6
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.7e-119 433.0 409 55.7
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 4.6e-119 432.2 421 58.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.9e-118 429.1 410 57.3
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.9e-118 429.1 404 55.4
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 3.9e-118 429.1 423 55.6
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 6.7e-118 428.3 401 56.6
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 8.7e-118 427.9 418 55.7
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.5e-117 427.2 409 55.3
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 1.3e-116 424.1 384 58.3
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.6e-116 423.7 405 57.3
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 5.3e-115 418.7 426 55.2
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.7e-113 413.7 411 54.7
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.7e-113 413.7 424 53.5
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 2.2e-113 413.3 423 53.0
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 2.2e-113 413.3 423 53.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.4e-112 410.6 412 53.9
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.2e-112 409.1 412 53.6
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 5.5e-112 408.7 404 53.7
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.2e-111 407.5 398 54.3
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 2.1e-111 406.8 412 53.6
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.3e-110 404.1 411 53.0
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 5.1e-110 402.1 411 53.3
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.5e-109 400.6 420 51.7
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 6.9e-107 391.7 404 52.5
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.6e-106 389.8 391 53.5
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.6e-106 389.8 421 51.5
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 5.0e-105 385.6 430 50.5
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 5.0e-105 385.6 417 52.0
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.2e-103 380.9 408 51.0
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.2e-103 380.9 448 49.3
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 2.7e-103 379.8 401 52.4
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 4.6e-103 379.0 504 45.2
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 1.3e-102 377.5 410 51.7
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.0e-102 376.3 291 63.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 5.1e-102 375.6 411 50.9
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 8.7e-102 374.8 415 50.4
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.1e-101 374.4 408 51.7
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 2.5e-101 373.2 416 50.0
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 4.3e-101 372.5 412 50.7
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.3e-100 370.9 411 50.4
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.3e-100 370.9 418 51.2
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.3e-100 370.9 418 51.2
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 2.8e-100 369.8 419 50.8
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.4e-99 366.7 409 50.4
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.4e-99 366.7 409 50.4
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 2.6e-98 363.2 404 49.0
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.0e-97 361.3 380 50.3
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 2.2e-97 360.1 415 47.2
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 2.2e-97 360.1 420 50.0
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 3.8e-97 359.4 408 49.8
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 3.8e-97 359.4 400 49.2
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 5.0e-97 359.0 270 64.8
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 6.5e-97 358.6 412 47.3
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 1.1e-96 357.8 397 50.6
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 4.2e-96 355.9 413 49.2
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 5.5e-96 355.5 415 47.0
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.4e-96 354.8 399 52.1
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 3.9e-94 349.4 406 49.5
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 1.1e-93 347.8 422 47.4
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.4e-93 345.9 399 50.9
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 9.7e-93 344.7 410 49.0
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.7e-92 344.0 411 49.6
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.1e-91 341.3 425 46.4
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 3.1e-91 339.7 429 47.6
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 4.5e-90 335.9 398 46.7
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 1.7e-89 334.0 416 45.7
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.7e-89 334.0 414 46.1
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 5.5e-88 328.9 418 46.9
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 4.7e-87 325.9 425 44.7
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 6.7e-86 322.0 425 44.5
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 4.8e-84 315.8 419 43.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 1.8e-83 313.9 421 42.8
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.2e-81 307.0 407 43.5
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 8.5e-81 305.1 418 43.3
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.1e-79 300.4 514 38.3
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.1e-75 288.1 277 53.4
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.4e-75 287.7 420 40.5
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 3.1e-75 286.6 277 53.4
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 3.1e-75 286.6 277 53.4
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 9.1e-75 285.0 431 41.8
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.7e-73 280.8 279 53.4
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 2.2e-73 280.4 278 52.9
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.0e-69 267.3 291 50.2
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.3e-65 254.6 222 58.1
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 2.3e-65 253.8 340 45.3
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 3.8e-65 253.1 308 46.4
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 9.5e-64 248.4 292 49.3
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.0e-62 245.0 250 50.0
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.5e-61 241.1 340 43.2
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.1e-59 233.4 280 45.4
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 6.1e-55 219.2 347 42.1
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 1.0e-54 218.4 167 63.5
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 1.7e-49 201.1 295 40.0
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 1.9e-48 197.6 188 54.3
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.5e-48 197.2 297 40.4
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 5.8e-45 186.0 292 40.8
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 4.9e-44 183.0 304 36.8
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 1.4e-43 181.4 270 43.3
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 9.2e-43 178.7 257 41.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-42 176.8 127 66.9
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 9.5e-40 168.7 259 37.8
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.1e-39 167.5 137 60.6
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 2.8e-39 167.2 146 59.6
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 4.4e-37 159.8 243 36.6
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.6e-33 146.0 105 64.8
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-31 141.4 106 65.1
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 2.6e-29 134.0 202 43.1
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 3.8e-28 130.2 197 38.6
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.4e-28 129.4 94 64.9
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.4e-27 128.3 197 40.1
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 3.5e-26 123.6 216 37.0
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 1.1e-24 118.6 98 55.1
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 2.5e-24 117.5 69 75.4
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 2.5e-24 117.5 222 38.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 9.9e-21 105.5 58 79.3
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 6.4e-20 102.8 266 29.7
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 5.4e-19 99.8 59 74.6
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.7e-18 97.4 126 43.7
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 4.6e-18 96.7 169 35.5
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.7e-17 92.4 63 61.9
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-16 92.0 79 54.4
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.2e-15 86.3 55 69.1
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 3.8e-12 77.0 96 46.9
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.9e-11 74.7 164 33.5
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.4e-11 73.2 63 54.0
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 4.6e-10 70.1 53 58.5
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.7e-09 65.9 48 58.3
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.5e-08 65.1 68 44.1
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 9.6e-08 62.4 73 49.3
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-06 58.2 49 53.1
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 6.9e-06 56.2 97 42.3


User provided reference genes

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