Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G128100 Glycine max HOM05D002502 ORTHO05D003592 9.3e-25 115.9 53 100.0
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 6.9e-12 73.2 36 97.2
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 6.9e-12 73.2 36 97.2
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 9.0e-12 72.8 36 91.7
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 9.0e-12 72.8 36 94.4
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 9.0e-12 72.8 36 94.4
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 9.0e-12 72.8 36 91.7
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 88.9
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 88.9
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 88.9
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 88.9
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 88.9
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 88.9
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 2.6e-11 71.2 36 94.4
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Cpa.g.c38405.1 Carica papaya HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Sed0022998 Sechium edule HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 3.4e-11 70.9 36 91.7
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 5.8e-11 70.1 36 86.1
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 88.9
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 88.9
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 88.9
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 88.9
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 7.6e-11 69.7 36 91.7
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 9.9e-11 69.3 36 88.9
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 9.9e-11 69.3 36 91.7
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 9.9e-11 69.3 36 88.9
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
Nn1g08184 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 91.7
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 91.7
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 91.7
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 1.3e-10 68.9 36 88.9
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
TAR365G0488 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.7e-10 68.6 36 88.9
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 2.2e-10 68.2 36 88.9
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 2.2e-10 68.2 36 88.9
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 86.1
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 88.9
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 86.1
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 86.1
Prupe.5G046000 Prunus persica HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 86.1
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 88.9
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 88.9
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 2.9e-10 67.8 36 88.9
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 3.8e-10 67.4 36 88.9
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.8e-10 67.4 36 83.3
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 3.8e-10 67.4 36 83.3
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.8e-10 67.4 36 83.3
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 3.8e-10 67.4 36 88.9
RcHm_v2.0_Chr3g0491451 Rosa chinensis HOM05D002502 ORTHO05D003592 3.8e-10 67.4 36 83.3
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 3.8e-10 67.4 38 78.9
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 4.9e-10 67.0 36 86.1
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 6.4e-10 66.6 36 83.3
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.4e-10 66.6 36 83.3
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.4e-10 66.6 36 83.3
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.4e-10 66.6 36 83.3
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 6.4e-10 66.6 36 83.3
CARHR010400 Cardamine hirsuta HOM05D002502 ORTHO05D003592 8.4e-10 66.2 36 86.1
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 8.4e-10 66.2 36 86.1
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 8.4e-10 66.2 36 86.1
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 8.4e-10 66.2 36 86.1
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 1.1e-09 65.9 36 86.1
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 1.1e-09 65.9 36 86.1
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.1e-09 65.9 36 86.1
Lsat_1_v5_gn_8_160220 Lactuca sativa HOM05D002502 ORTHO05D003592 1.1e-09 65.9 36 86.1
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 1.9e-09 65.1 36 86.1
Sabra09G0039400 Salix brachista HOM05D002502 ORTHO05D003592 1.9e-09 65.1 36 83.3
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 2.4e-09 64.7 36 80.6
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 2.4e-09 64.7 36 83.3
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 3.2e-09 64.3 36 83.3
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 4.2e-09 63.9 34 85.3
RcHm_v2.0_Chr5g0051911 Rosa chinensis HOM05D002502 ORTHO05D003592 4.2e-09 63.9 36 80.6
BcaC05g24905 Brassica carinata HOM05D002502 ORTHO05D003592 5.5e-09 63.5 36 83.3
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 5.5e-09 63.5 36 83.3
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 5.5e-09 63.5 36 83.3
Pp3c23_20710 Physcomitrium patens HOM05D002502 ORTHO05D003592 5.5e-09 63.5 36 83.3
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 5.5e-09 63.5 36 86.1
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 7.1e-09 63.2 36 80.6
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 7.1e-09 63.2 36 83.3
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 7.1e-09 63.2 36 80.6
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 7.1e-09 63.2 36 80.6
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 9.3e-09 62.8 36 80.6
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 9.3e-09 62.8 36 80.6
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 1.2e-08 62.4 36 80.6
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 1.2e-08 62.4 36 80.6
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.6e-08 62.0 36 77.8
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 1.6e-08 62.0 36 80.6
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 1.6e-08 62.0 36 80.6
THA.LOC104799100 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 1.6e-08 62.0 36 77.8
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.7e-08 61.2 40 80.0
MCO16G373 Micromonas commoda HOM05D002502 ORTHO05D003592 7.9e-08 59.7 35 71.4
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 1.3e-07 58.9 42 69.0
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 2.3e-07 58.2 42 69.0
Prupe.5G045900 Prunus persica HOM05D002502 ORTHO05D003592 3.0e-07 57.8 33 78.8
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 1.1e-06 55.8 28 92.9
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 1.5e-06 55.5 28 89.3
THA.LOC104824560 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 1.5e-06 55.5 39 66.7
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 1.9e-06 55.1 36 69.4
Haze_26385 Corylus avellana HOM05D002502 ORTHO05D003592 2.5e-06 54.7 34 70.6
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.3e-06 54.3 28 85.7


User provided reference genes

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